Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5353g00016 ATGGGGAACTCAGTCGGCCATCGCAAACACCGTAACTCCTTTCCTCACTACCCCACACCTCCCTCCTATATAAATGCTGCTCAGCCACACCTTCCAAACCCAATTTCAGCTCCTCCCTCTCACGGCCAGTTCGCCGCCGGAATGCTCTCTTTACCTTATTCCCACGTCGACTCCAGTTTGCGTGCTCTCGCCGCTCAAGCTGAAGGCTTTGGTCGCTGTGCGATCGGTGGGCTTCATGGTCCCCTTTATCACGTTACAACCTTAGCAGATGATGGACCAGGGTCACTTCGCTATGGTTGTCGCAGAAAAGAACCGTTGTGGATTGTATTTGAGGTTTCTGGTACTATTCATCTTTCATCTTACTTGAATGTGTCATCTTACAAGACTATTGATGGCCGAGGTCAAAGGATTAAACTCACTGGAAAGGGTTTGCGGCTGAAGGAATGTGAACATGTAATAATTTGCAACTTAGAGTTAGAAGGTGGTAGAGGGCCTGATGTGGATGGCATTCAGATCAAGCCTAATTCAAAGCACATATGGATAGACCGTTGTAGCCTCCGTGATTTTGATGATGGACTGATAGATATTACTCGAGAAAGCACTGATATTACTATTTCTAGATGTCATTTTTCTCAGCATGACAAAACGATGCTTATTGGGGCTGATTCCTCACACACTGGTGATAGATGCATAAGGGTGACTATTCACCATTGTTTCTTCGATGGGACACGACAGCGCCATCCTCGTGTTAGATTTGCAAAAGTACACCTGTACAATAATTACACCAGAAATTGGGGCATATATGCTGTTTGTGCGAGCGTGGAATCACAGATATACTCACAATGCAACATCTATGAAGCAGGGCAAAAGAAAGTAGCATTTAAGTATCTCTCTGAAAAGGCAGGGGACAAGGAGGCGGAAGCAAGTGGTCACATATGGTCTGAAGGAGACTTGTTCATCAGTGGAACTCAGGCGGGCTTAATGAGGGAGAGCATGGGAGGTCCCGCATTTCATCCTAGTCAACAATATACAACGTGGACAGTGGCACCTCCTACAGAAGATCTCAAACAGCTTCTTCATCACTGCACTGGATGGCAATGCGTTGCACGCCCCCCAGATCAGCCCCTGCCTGCATAA 1137 0.4688 MGNSVGHRKHRNSFPHYPTPPSYINAAQPHLPNPISAPPSHGQFAAGMLSLPYSHVDSSLRALAAQAEGFGRCAIGGLHGPLYHVTTLADDGPGSLRYGCRRKEPLWIVFEVSGTIHLSSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLELEGGRGPDVDGIQIKPNSKHIWIDRCSLRDFDDGLIDITRESTDITISRCHFSQHDKTMLIGADSSHTGDRCIRVTIHHCFFDGTRQRHPRVRFAKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKVAFKYLSEKAGDKEAEASGHIWSEGDLFISGTQAGLMRESMGGPAFHPSQQYTTWTVAPPTEDLKQLLHHCTGWQCVARPPDQPLPA 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5353g00016 378 PANTHER PECTATE LYASE 18-RELATED 55 327 IPR045032 GO:0030570
Pral5353g00016 378 Gene3D - 53 361 IPR012334 -
Pral5353g00016 378 Pfam Pectate lyase 121 284 IPR002022 -
Pral5353g00016 378 MobiDBLite consensus disorder prediction 1 38 - -
Pral5353g00016 378 SUPERFAMILY Pectin lyase-like 66 368 IPR011050 -
Pral5353g00016 378 SMART amb_all 93 291 IPR002022 -
Pral5353g00016 378 PRINTS Pollen allergen Amb family signature 66 83 IPR018082 -
Pral5353g00016 378 PRINTS Pollen allergen Amb family signature 121 137 IPR018082 -
Pral5353g00016 378 PRINTS Pollen allergen Amb family signature 268 287 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5353g00016 Pral-Chr5353 84639 87926 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5353g00016 48 375 Polysaccharide Lyase AT3G09540 68.788 1.63e-167 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5353g00016 K01728 - tcc:18597629 614.379