Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5353g00008 ATGGAGACGCAGCGAATTATCGAATTTCCGCATCAAAACATGGACAAGCGCCCCCGGAAGAGACCTCGTTTAACATGGGATATGCCCCCTGCTATTCCTCCAGCTTCCAAGCCTCTTCCGCCTTTATATTGCAGCCAGGAACTTGCGAATGGAGTAGTTCCGAATCATGTATATTCTTCCGTCATCTACAGGGGAGTGCCTCGCAATGGATCACCCCCTTGGAGACCTGACGATAAAGATGGGCACTACGTTTTTGCCGTTGGTGAAAATCTAACGTCACGATACAGAATTCTCAGTAAAATGGGTGAAGGGACATTCGGCCAAGTCTTGGAATGCCTTGACAATGAAAAGGAAGAAGTTGTGGCAATCAAAGTTATTCGTTCCATACACAAGTATCGTGAGGCTGCAATGATTGAAATTGATGTTCTGCAGAGGCTTGCCAGGCATGACATTGGCAATGCACGTTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATTGTATTTGAGAAGCTTGGGCCAAGCTTATACGATTTTCTCCGCAAAAACAGCTATCGTTCTTTTCCCATTGATCTTGTTCGGGAGTTTGGCAGACAACTTTTGGAGTCTGTAGCATTTATGCATGATTTACGATTGATTCACACTGATTTGAAGCCAGAGAATATTCTTCTTGTCTCATCAGACTATATTAAAGTTCCAGACTACAAGTTTGTAGCTCGAACTACAAAAGATGGCTCCTATTTCAAGAACTTGCCCAAGTCAAGTTGCATAAAACTCATTGATTTTGGGAGTACAACATTTGAACATCAGGATCACAGTTATGTGGTGTCAACCAGACACTATCGAGCACCAGAGGTTATCTTAGGTCTTGGGTGGAATTATCCCTGCGATCTCTGGAGTGTTGGTTGTATACTGGTTGAACTCTGCTCTGGTGAAGCCCTTTTTCAAACTCATGAAAACTTGGAGCATCTTGCAATGATGGAGAGAGTTTTGGGGCCACTACCTCCACATATGGTGGTTAGGGCTGACCGTCGAGCTGACAAATATTTTAGAAGGAATGCACGTTTGTGTTGGCCTGATGGTTCAACTTCAAGAGAAAGCATGAGGGCTGTTTGGAAATTGCCTCGCTTGCCGAACCTCATAATGCAGCATGTCGATCATTCTGCTGGTGATTTGATTGATCTTCTGCAAGGACTCCTTCGATATGATCCTGCTGAACGGTTTAAAGCAAGGGAGGCATTAAGACATCCCTTCTTCACCAGAGATCCTAAACGTCGTTATCCTCTGTAA 1302 0.4393 METQRIIEFPHQNMDKRPRKRPRLTWDMPPAIPPASKPLPPLYCSQELANGVVPNHVYSSVIYRGVPRNGSPPWRPDDKDGHYVFAVGENLTSRYRILSKMGEGTFGQVLECLDNEKEEVVAIKVIRSIHKYREAAMIEIDVLQRLARHDIGNARCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVREFGRQLLESVAFMHDLRLIHTDLKPENILLVSSDYIKVPDYKFVARTTKDGSYFKNLPKSSCIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPPHMVVRADRRADKYFRRNARLCWPDGSTSRESMRAVWKLPRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERFKAREALRHPFFTRDPKRRYPL 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5353g00008 433 ProSiteProfiles Protein kinase domain profile. 95 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5353g00008 433 CDD PKc_CLK 82 423 - -
Pral5353g00008 433 SMART serkin_6 95 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5353g00008 433 Gene3D Phosphorylase Kinase; domain 1 82 175 - -
Pral5353g00008 433 FunFam Serine/threonine-protein kinase AFC2 171 423 - -
Pral5353g00008 433 FunFam Serine/threonine-protein kinase AFC2 82 175 - -
Pral5353g00008 433 Gene3D Transferase(Phosphotransferase) domain 1 149 423 - -
Pral5353g00008 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Pral5353g00008 433 SUPERFAMILY Protein kinase-like (PK-like) 82 429 IPR011009 -
Pral5353g00008 433 Pfam Protein kinase domain 95 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5353g00008 433 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 2 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5353g00008 Pral-Chr5353 42540 46915 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5353g00008 95 429 Core Cell Cycle Gene Families AT1G76540 26.724 3.93e-31 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Pral5353g00008 Pkinase 1.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5353g00008 K08287 - pvy:116106461 792.727