Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5353g00006 ATGGATCATAACGTAGCAGTAAAGGAGCAAAGCAGGTTTGAAGACATAGCCAGGTGTCTAATGATGCTGTCTCATGTCCAAGGCAATAACATTATGAGATCAAAGCGGGAAGACAGCTTCGCAGGCTGTCCTGTGGAATACGAGTGCAAGACATGCAAACGCAAGTTCTCGTCGTTTCAGGCTCTTGGTGGCCACAGGGCTAGCCACAAGAGACCAAGGCTGGAGGGGGATCATGAACTGAGAGCGCAGGCTAAGTCTCTGAGGTTAGCAACTTCAGGACCAAAAACGCACGAGTGCTCCATTTGCGGTCTGGAGTTCTCGCTGGGCCAAGCACTGGGTGGCCACATGAGAAGACACAGAGCCACCCACAACGACGACGTCGTCGACCATCGCTTTTCTTCCAAAGTGCCGGTTTTGAAGAGATCCAATAGCAAGAGGGTTGAATTCTTGGACCTTAACTTGACCCCACTCGAGAATGACTTGAAGCTCTTGTTTGGCAGCAAGGCACCTAAGATTGATGCCCTCGTCTAA 531 0.5066 MDHNVAVKEQSRFEDIARCLMMLSHVQGNNIMRSKREDSFAGCPVEYECKTCKRKFSSFQALGGHRASHKRPRLEGDHELRAQAKSLRLATSGPKTHECSICGLEFSLGQALGGHMRRHRATHNDDVVDHRFSSKVPVLKRSNSKRVEFLDLNLTPLENDLKLLFGSKAPKIDALV 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5353g00006 176 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Pral5353g00006 176 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Pral5353g00006 176 ProSitePatterns Zinc finger C2H2 type domain signature. 49 69 IPR013087 -
Pral5353g00006 176 SUPERFAMILY beta-beta-alpha zinc fingers 47 119 IPR036236 -
Pral5353g00006 176 Pfam C2H2-type zinc finger 97 121 - -
Pral5353g00006 176 Pfam C2H2-type zinc finger 47 72 - -
Pral5353g00006 176 PANTHER ZINC FINGER PROTEIN ZAT5 8 160 - -
Pral5353g00006 176 ProSiteProfiles Zinc finger C2H2 type domain profile. 47 74 IPR013087 -
Pral5353g00006 176 Gene3D Classic Zinc Finger 44 123 - -
Pral5353g00006 176 SMART c2h2final6 47 69 IPR013087 -
Pral5353g00006 176 SMART c2h2final6 97 119 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5353g00006 Pral-Chr5353 38605 39295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5353g00006 8 173 C2H2 Transcription Factor Family AT2G37430 47.486 4.79e-41 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral5353g00006 zf-C2H2_6 4.3e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5353g00006 - - gmx:100527151 197.593