Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5352g00021 ATGGTGATCGCTGTCTACCTGATGAGTTTCCTGAGGCCCTCAGCATTGTACGCCTTTCTTCTTACATGTCCTTCCTTCAGATGGATGCCCTGTCAGAGTTGGGGCTTTCTTCGATGGCCCGGTCTTGATGGCTTCTTGAGACTTTTGGTGATGTTCCTTCTCTGGTCTATGTTTTTGGAGCTTCGCTTCATCCCTTCGTCTTCTATGCACCCGACTCTCACAGTTGGTGATCGAATTATTGTCGAGAAGGCTTCGTATTACATCAGGAGTCCTGCCATACAGGATATTGTGTTGTTCCGAGATCCAACACAGCTGTTGGGAGACAAAGCAGCGGATATAGTTATCAAGAGAGTTGTTGCAAAAGCCGGAGATTTTGTTGAGGTTCATCATGGGTCTCTCTACATCAATGGTGTTGCTCAGAAGGAAGATTATGTAGCAGCACAGCCAGCATACACAACAAACTTAACTTATGTACCAAACGGTCATGTTTATGTGTTAGGTGACAATCGAAACAACAGCTATGATTCCCATATTTGGGGACCGCTGCCTATCAAAAACATAGTGGGGAGATATGTCATGTGTTGTCACAGACCTACAGACATCTGA 606 0.4538 MVIAVYLMSFLRPSALYAFLLTCPSFRWMPCQSWGFLRWPGLDGFLRLLVMFLLWSMFLELRFIPSSSMHPTLTVGDRIIVEKASYYIRSPAIQDIVLFRDPTQLLGDKAADIVIKRVVAKAGDFVEVHHGSLYINGVAQKEDYVAAQPAYTTNLTYVPNGHVYVLGDNRNNSYDSHIWGPLPIKNIVGRYVMCCHRPTDI 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5352g00021 201 ProSitePatterns Signal peptidases I signature 3. 163 176 IPR019758 GO:0004252|GO:0016020
Pral5352g00021 201 PRINTS Bacterial leader peptidase 1 (S26A) family signature 57 73 IPR000223 GO:0006508|GO:0008236|GO:0016020
Pral5352g00021 201 PRINTS Bacterial leader peptidase 1 (S26A) family signature 114 126 IPR000223 GO:0006508|GO:0008236|GO:0016020
Pral5352g00021 201 PRINTS Bacterial leader peptidase 1 (S26A) family signature 158 177 IPR000223 GO:0006508|GO:0008236|GO:0016020
Pral5352g00021 201 PANTHER SIGNAL PEPTIDASE I 44 198 IPR000223 GO:0006508|GO:0008236|GO:0016020
Pral5352g00021 201 Gene3D Umud Fragment, subunit A 66 198 - -
Pral5352g00021 201 FunFam Peptidase/ serine-type peptidase 66 195 - -
Pral5352g00021 201 ProSitePatterns Signal peptidases I serine active site. 66 73 IPR019756 GO:0004252|GO:0016020
Pral5352g00021 201 NCBIfam signal peptidase I 47 194 IPR000223 GO:0006508|GO:0008236|GO:0016020
Pral5352g00021 201 Pfam Signal peptidase, peptidase S26 45 193 IPR019533 GO:0004252|GO:0006465
Pral5352g00021 201 CDD S26_SPase_I 60 190 IPR019533 GO:0004252|GO:0006465
Pral5352g00021 201 SUPERFAMILY LexA/Signal peptidase 57 194 IPR036286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5352g00021 Pral-Chr5352 89953 93742 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5352g00021 66 190 MADS-box Gene Family AT1G29960 30.400 5.60e-08 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5352g00021 K03100 - gmx:100306121 317.39