Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5352g00017 ATGGCGCCAATCGTTCAGAGCTCCCAGCCATGGGTGGAGAAATATCGGCCAAGGCAAGTTAAAGATGTAGCCCACCAGGATGAAGTGGTTCGAGTACTCACAAACACCCTCGAAACCGGAAGTTGCCCGCACATGCTATTCTATGGTCCACCCGGCACTGGAAAGACCACAACTGCACTTGCGATCGCCCATCAGCTCTTCGGACCGGAGCTTTACAAGTCTAGGGTGCTGGAACTGAATGCGAGTGATGATCGTGGGATTAATGTTGTGCGGACAAAGATTAAGGATTTTGCCGCTGTGGCTGTTAGTACTAGTCAGCGTAAGAGTGGTTACCCATGCCCGCCTTATAAGATTATTGTTCTAGATGAGGCCGATTCAATGACCGAAGATGCTCAGAATGCTCTGCGTCGTACAATGGAAACTTACTCTAAGGTTACAAGGTTCTTTTTTATATGCAATTACATTAGCAGGATTATAGAACCACTTGCTTCAAGGTGTGCAAAATTCAGGTTTAAGCCGCTGTCAGAAGAAATCATGAGCAGCCGGATACTGTACATTTGCAATGAAGAAGGGCTTAATCTTGATTCTGAGGCTCTTTCAACCCTTAGTTCCATTTCTCAAGGAGATCTCCGTAGGGCTATTACATACTTACAGTCGGCTGCCCGCTTATTTGGATCTTCAATTTCTTCAAAGGACCTGATTTCTGTCTCTGGGGTCGTTCCAACAGAGGTTGTGCAAGCATTTCTTGCAACATGTAAAAGTGGTAATTTTGATCTAGCAAACAAGGAGGTCAATGATTTCATTGCAGAAGGATATCCAGTCTCTCAGTTACTAACTCAGTTATTTGAGGCCATTGTTGAAGCAGGTGATATATCAGATGAACAGAAGGCAAGAATATCCAAGAAATTGGGTGAAGCAGATAAGTGCCTTGTGGATGGTGCCGATGAATATTTGCAGCTTCTTGATGTGGCCAGCAATACAATTCGAGCTTGCTGTAACATGCCAGAACTTTTTCTTTCGAGGGATAGTCAGAGTCTTGGTCTTGCGGAAACTTGCCATGTGACTGTAATCTGTATCTATTATTGTTATTGGCTTCCAAATAGCTTCGCGATCTTGTTACTTGTGTTCGATATAAGGGAAAAAGAGAACAAAGATTCCCGTGTTTATGCCGCAGAAAGACAAGTATACTGTGGAATATCAGCTGCATAA 1209 0.4392 MAPIVQSSQPWVEKYRPRQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVSTSQRKSGYPCPPYKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILYICNEEGLNLDSEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVVPTEVVQAFLATCKSGNFDLANKEVNDFIAEGYPVSQLLTQLFEAIVEAGDISDEQKARISKKLGEADKCLVDGADEYLQLLDVASNTIRACCNMPELFLSRDSQSLGLAETCHVTVICIYYCYWLPNSFAILLLVFDIREKENKDSRVYAAERQVYCGISAA 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5352g00017 402 FunFam Replication factor C subunit 4 240 329 - -
Pral5352g00017 402 Gene3D - 240 329 - -
Pral5352g00017 402 SMART AAA_5 41 174 IPR003593 GO:0016887
Pral5352g00017 402 Pfam Replication factor C C-terminal domain 241 324 IPR013748 -
Pral5352g00017 402 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 233 IPR027417 -
Pral5352g00017 402 CDD HLD_clamp_RFC 174 233 - -
Pral5352g00017 402 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 9 322 - -
Pral5352g00017 402 CDD AAA 26 166 - -
Pral5352g00017 402 Pfam ATPase family associated with various cellular activities (AAA) 45 172 IPR003959 GO:0005524|GO:0016887
Pral5352g00017 402 Gene3D - 3 173 IPR027417 -
Pral5352g00017 402 Gene3D - 176 239 - -
Pral5352g00017 402 FunFam Replication factor C subunit 4 176 239 - -
Pral5352g00017 402 SUPERFAMILY post-AAA+ oligomerization domain-like 240 325 IPR008921 GO:0003677|GO:0006260
Pral5352g00017 402 FunFam Replication factor C subunit 5 3 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5352g00017 Pral-Chr5352 75095 79418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5352g00017 1 338 Core DNA Replication Machinery Family AT1G21690 78.761 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5352g00017 K10755 - egr:104450918 604.749