Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5352g00015 ATGGGAAGCCTGCAGCAGCAGCAGGAGCAGCTTGGAGGTAGCAGACGGATAGCAGCCGTGGACGCTTCTCCTCCGCCGCCTGTCCAAAATGCGGACTCAAAGCAACAGAAACAACCTGCGGGTTGGAGGAAGCTTTTGGCATTTATAGGTCCTGGTTTCCTGGTTTCCTTGGCTTACCTTGATCCTGGAAACTTGGAAACTGATCTCCAAGCTGGAGCTAACCACAGATATGAGCTGCTGTGGGTGATTCTCATTGGGCTCATCTTCGCCCTCATCATTCAGTCCTTGGCTGCAAATCTTGGCGTGAGCACAGGTAAACACCTTTCGGAATTGTGTAAAGCGGAGTATCCATGGTTTGTCAAGTACTGCTTATGGCTATTGGCCGAGCTTGCCGTTATAGCCGCAGATATCCCTGAAGTGATTGGCACCGCCTTTGCTCTCAACATACTCTTCCATATCCCCGTGTGGGCTGGAGTTCTATTGACTGGTTTGAGCACTCTCTTGCTTCTGGGTCTCCAAAGATTCGGGATAAGGAAGCTGGAATTGCTGATATCAACGCTAGTGTTTATTATGGCGGGATGTTTCTTCGGAGAAATGAGCTACGTAAAGCCACCAGCTTCTGGGGTTCTCAAAGGCATGTTTGTGCCGAAACTAAGTGGTCAGGGAGCCACCGGCGACGCCGTTGCCCTTTTCGGTGCTCTTGTCATGCCGCACAACCTTTTTCTCCACTCTGCTCTCGTCCTCTCTAGAAAAATCCCCAATACCGTGCGTGGCATCAATGACGCTTGTAGATATTTCCTAATAGAAAGTGGGATTGCACTCTTCATAGCGTTTCTAATCAATGTGGCAGTAATCTCTGTCTCTGGCACTGTTTGTGCTTCCCCCAACCTTTCTCACGAAAATGCAGATCATTGCAGCGATCTCACTCTTAACTCTGCTTCTTTCCTTCTCAAGAATGTTCTGGGACGGTCCAGCTCGACCATTTATGCCATCGCACTGCTAGCCTCGGGCCAAAGCTCTGCTATCACTGGCACATATGCAGGGCAATTCATTATGCAGGGTTTCTTGGACTTGAGGATGAAAAAATGGATTAGGAACCTGGTGACTCGGACTATTGCCATAGCTCCTAGTCTTATTGTCTCCCTTATTGGTGGATCATCTGGGGCTGGACGGCTCATCGTCATCGCCTCGATGATACTTTCATTTGAGCTTCCATTCGCTCTGATCCCACTGCTCAAGTTTAGCAGCAGCAGCACCAAGATGGGTCCTCACAAGAATTCTATAATCATCATCATCATATCATGGATTCTGGGGGCAGGGATAATCGGAATCAATGTGTATTACCTAAGTACAGGGTTCGTGGGTTGGCTAATTCACAGCCTACCAAAGGTGGCGAATGTGTTCATTGGGATCATAGTTTTCCCCTTGATGGCAATTTACATTGCAGCGGTGATATATTTGACCCTAAGAAAAGACACTGTGAAGACATATATTGAGACGAAGGACGACCCAACAGTACAGACCCACATGGAAAAGGGGTTCGTAAATCCTGATAATGGCCAGTTGCAGTTGGGTCATGCTCCCTACAGAGAGGATTTAGCCGACGTCCCATTCCCTGAATAG 1623 0.4843 MGSLQQQQEQLGGSRRIAAVDASPPPPVQNADSKQQKQPAGWRKLLAFIGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVILIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPWFVKYCLWLLAELAVIAADIPEVIGTAFALNILFHIPVWAGVLLTGLSTLLLLGLQRFGIRKLELLISTLVFIMAGCFFGEMSYVKPPASGVLKGMFVPKLSGQGATGDAVALFGALVMPHNLFLHSALVLSRKIPNTVRGINDACRYFLIESGIALFIAFLINVAVISVSGTVCASPNLSHENADHCSDLTLNSASFLLKNVLGRSSSTIYAIALLASGQSSAITGTYAGQFIMQGFLDLRMKKWIRNLVTRTIAIAPSLIVSLIGGSSGAGRLIVIASMILSFELPFALIPLLKFSSSSTKMGPHKNSIIIIIISWILGAGIIGINVYYLSTGFVGWLIHXSLPKVANVFIGIIVFPLMAIYIAAVIYLTLRKDTVKTYIETKDDPTVQTHMEKGFVNPDNGQLQLGHAPYREDLADVPFPE 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5352g00015 541 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 32 496 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral5352g00015 541 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 43 419 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral5352g00015 541 Pfam Natural resistance-associated macrophage protein 66 427 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral5352g00015 541 NCBIfam Nramp family divalent metal transporter 50 416 - -
Pral5352g00015 541 MobiDBLite consensus disorder prediction 1 34 - -
Pral5352g00015 541 PRINTS Natural resistance-associated macrophage protein signature 124 150 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral5352g00015 541 PRINTS Natural resistance-associated macrophage protein signature 337 356 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral5352g00015 541 PRINTS Natural resistance-associated macrophage protein signature 152 171 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral5352g00015 541 PRINTS Natural resistance-associated macrophage protein signature 397 416 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral5352g00015 541 PRINTS Natural resistance-associated macrophage protein signature 177 198 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral5352g00015 541 PRINTS Natural resistance-associated macrophage protein signature 227 250 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral5352g00015 541 PRINTS Natural resistance-associated macrophage protein signature 365 382 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral5352g00015 541 Hamap Divalent metal cation transporter MntH [mntH]. 28 453 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5352g00015 Pral-Chr5352 67441 70705 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5352g00015 12 537 Inorganic Solute Cotransporters AT1G80830 59.735 0.0 628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5352g00015 K21398 - gmx:100787785 857.055