Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5352g00011 ATGAAAGTTTCTCAAAAATTGTGCCCTCGGTCATTCCCTCAAATACCAAAGTCGCTTCGTCTCTGTTCTTCGATCTCAACCCGCCATTTGCGTCAATTGCAGCGGAACGCCTCTTCCTTCAACATGGAACCAGAAAAGGGCAAACAGTCTTCCCACAAAACCCCATACACTGAACTCGAGCAAGTTAACTCTGATTTCACCCTGGCAATCGCTTTGCAAGAGCAAGAGGGAACCTTCACAATGCTTGACACCATGGACAGCGAAGAAAGCAGCAATGGAGATGAAAGCGAGTCCTCTTTCGAAGACGATGAAGATGAAGATGCTGACTTTTCCGAGAGCCAAGAATTCGAATTTGGAGACCTTCAGTTTCTTGAGGGCGAAGGAAGCAATGATGAGGACATGGAAGAAGATGAGATCGATCCGGATGAAATGTCCTACGAAGAGTTGATTGAGTTGGCGGAGTTCATAGGAGAAGAGAGGAAAGGATTGCCAGCAAATGAAATCCCTTCCTGTCTGCATCCTTACACTTGCCATTTTGCAGAAAACAAGACAGGAACAGATCGCTGTGTGATATGTCAGGTTGAATACGAAGAAGGTGAAGCACTGATGGCACTTCATTGTGAGCACCCTTATCATTCAGATTGCATCATCAAGTGGCTTCAGATTAAGAAGGTTTGTCCAATTTGTAGCTCTGAAGTCTCCACTCCAAAAGTGGCTGATAAGAACCCTTGA 732 0.4536 MKVSQKLCPRSFPQIPKSLRLCSSISTRHLRQLQRNASSFNMEPEKGKQSSHKTPYTELEQVNSDFTLAIALQEQEGTFTMLDTMDSEESSNGDESESSFEDDEDEDADFSESQEFEFGDLQFLEGEGSNDEDMEEDEIDPDEMSYEELIELAEFIGEERKGLPANEIPSCLHPYTCHFAENKTGTDRCVICQVEYEEGEALMALHCEHPYHSDCIIKWLQIKKVCPICSSEVSTPKVADKNP 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5352g00011 243 SMART ring_2 189 229 IPR001841 -
Pral5352g00011 243 MobiDBLite consensus disorder prediction 126 141 - -
Pral5352g00011 243 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 38 135 IPR043312 -
Pral5352g00011 243 Pfam Ring finger domain 188 229 IPR001841 -
Pral5352g00011 243 MobiDBLite consensus disorder prediction 35 55 - -
Pral5352g00011 243 MobiDBLite consensus disorder prediction 85 141 - -
Pral5352g00011 243 SUPERFAMILY RING/U-box 188 236 - -
Pral5352g00011 243 MobiDBLite consensus disorder prediction 88 114 - -
Pral5352g00011 243 FunFam E3 ubiquitin ligase BIG BROTHER-related 155 236 - -
Pral5352g00011 243 ProSiteProfiles Zinc finger RING-type profile. 189 230 IPR001841 -
Pral5352g00011 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 239 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5352g00011 Pral-Chr5352 46945 47954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5352g00011 136 233 C3H Transcription Factor Family AT3G63530 50.495 9.67e-29 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5352g00011 K19045 - gmx:100526881 249.595