Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5352g00009 ATGGCGGAGACAACCTCTCCCATGCTCATTGACGACGATGATAACAACTTCTCTGCCATACCCAACAAGGGCAAAAGCGTGGTCGTTGCCGGCAATCCACCCGCCAGCAAGGATACTCCGTGGGTTGAAAAGTACCGCCCTAAATGCCTCGACGACGTTGCCGCACATCGCGACATTGTCGATACCATTGATAGGCTGACTTCTGAGAACAGATTACCCCATCTTCTATTGTACGGCCCTCCAGGCACGGGCAAAACATCAACTATTCTTGCTGTGGCCCGCAAACTATATGGGGCACAATACCAAAACATGATTTTGGAGCTCAATGCATCAGATGACAGGGGAATTGATATCGTACGCCAACAGATACAAGATTTTGCTAGCACCCAGAGCTTCTCATTTGGAGTCAAGTCCTCTGTAAAGTTGGTCTTGTTAGATGAGGCAGATGCAATGACAAAGGATGCACAGTTTGCATTGCGTAGAGTGATTGAGAAATATACAAAAAATACTAGGTTTGCACTCATCTGTAATCATGTAAACAAGATTATTCCAGCACTGCAATCAAGATGCACTCGATTTCGGTTTGCCCCTCTCGATGCTGTCCATATTACTGAGAGATTGAAGCATATTGTTAAGGCTGAAGGGCTTGATGTTACAGAAAGCGGTTTAGCAGCACTTGTTCGGCTCTGTAATGGAGATATGAGAAAGGCTTTGAACATTTTGCAGTCAACGCATATGGCTTCTCAGCAGATAACAGAAGAAGCTGTTTATCTTTGTACTGGAAACCCATTACCCAAAGACATTGAGCAAATCTCTTATTGGCTTCTGAATGAACAATTTGCAGATAGTTTTAAAAGAATATATGAAATCAAGACAAGAAAAGGATTGGCGCTGGTGGATATTGTGAGAGAGGTCACAACGTTCGTTTTTAAGATTAAGATGCCCCCAAGCGTTCGAGTGCAGCTGGTGAATGATTTGGCTGACATAGAGTACAGATTGAGTTTTGGGTGCAATGATAAGCTGCAGCTGGGATCGGTTATTGCTTCTTTCACACGTGCTAGGTCTGCACTGGTTGCGGCTGCTAATTAA 1089 0.4435 MAETTSPMLIDDDDNNFSAIPNKGKSVVVAGNPPASKDTPWVEKYRPKCLDDVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYQNMILELNASDDRGIDIVRQQIQDFASTQSFSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHITERLKHIVKAEGLDVTESGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNEQFADSFKRIYEIKTRKGLALVDIVREVTTFVFKIKMPPSVRVQLVNDLADIEYRLSFGCNDKLQLGSVIASFTRARSALVAAAN 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5352g00009 362 FunFam Replication factor C subunit 5 200 262 - -
Pral5352g00009 362 Gene3D - 201 262 - -
Pral5352g00009 362 FunFam Replication factor C subunit 5 33 198 - -
Pral5352g00009 362 SMART AAA_5 71 201 IPR003593 GO:0016887
Pral5352g00009 362 SUPERFAMILY post-AAA+ oligomerization domain-like 263 353 IPR008921 GO:0003677|GO:0006260
Pral5352g00009 362 FunFam Replication factor C subunit 5 263 360 - -
Pral5352g00009 362 Pfam Replication factor C C-terminal domain 263 349 IPR013748 -
Pral5352g00009 362 Gene3D - 34 197 IPR027417 -
Pral5352g00009 362 Pfam ATPase family associated with various cellular activities (AAA) 75 195 IPR003959 GO:0005524|GO:0016887
Pral5352g00009 362 CDD AAA 59 197 - -
Pral5352g00009 362 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 40 344 - -
Pral5352g00009 362 CDD HLD_clamp_RFC 198 260 - -
Pral5352g00009 362 Gene3D - 263 361 - -
Pral5352g00009 362 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 256 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5352g00009 Pral-Chr5352 37243 40737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5352g00009 1 361 Core DNA Replication Machinery Family AT1G77470 78.049 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5352g00009 K10756 - gmx:100782652 633.639