LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral5351g00049	ATGGTGAACGACGTGGCACAGATTAATATGGCAGTCCCTGATTTGCGTTTGGAGGCAAAACTGTCAGCTGAGGAAAATTCGAGGATGTTTGCTGGACGGCAAATACATCCCTTTTTTTCTTCATGGAAGGTTGGGAAGAAACCTCATGAGGCAGCTGAATCGGAACTCAGTTTATGTGGAGCGAGGAGGAAAGATGAGGAAGTACTTGCCCGTGCTGCTATTCATGTGTTTGAAAATAATCAGGATATCAATGATACATCATTGCCAGACTGGAAAAACTGGACTTTTTTGGGGCAGACTGCCAAAGCAAATTGCTGTCCAGAAAGTTCATTTTCCTCTGTTTTTGAGGGTTCTATTGAGCCCTTAAATATTGATAAGCTTCACAGTACTTTTTATCCCCCTGGCTGTATAGATTCTCAAAATGTCCCATCTGGTTCAGATCAACAATCTATAGAATCTACGCAGCCTCAAGTAGAAAAGTCAGCTGGACCGGCTGGAGGGCAAACAAGCCTTCAATCACTAGAAGCTGAATTGCAGGACATGAAAGCCGATACTGAGCAAGCTGGCATTTTTAGAAAGTCAGATCCTGAACCACAGAGTAGATTTCTTCAAGAGAGCATGAGGTTGTATTACCATAGTTGTGGAGATAAGGCCGAGGGAACCTTATGGACATACAAGTACAAGCCAACAAAGGCCTTTGAGGTATGTGGTAATGATGAGTCTGTGAAATTTTTGCGTGACTGGTTACAACTCTGGCATGGAAGACGTTATCAGAGAAGGAAAGATGCCTTGTATAGGGATAAAGTTGATATGCAAGGCGATGACGATGATCATGATTATGTCTGTTCTCATTATGACTATGATTCAGAAGACATGACCGAGGAGGACTCCCTGGAGAATGTCCTCTTAATTACTGGACCAATAGGGTGTGGGAAGTCTGCGGCTGTATATGCTTGTGCACAAGAGGAGGGGTTTGAGGTTCTAGAGCTCAATGCATCAGACTGTCGGAATGGGACTGCTGTCAAGCAACACTTTGGAGATGCTCTTGGATCACGTGGGTTCAAAAGGTTATTGGAACACACCAATAGTTCACCAATGAAGAAAAAGAGGAAGTTACCCTCAGGCCTGGCTTTGCCTTGTAACAAAGCATCTGATGCGTTAAATGAAGGGGTAGCTGGACCAATAGCCATATCTGATGATGAAGCTGTCTGCCCTGATGCAAGATCTTGGACATTACCCGGCCACAGAAACTTAATTGGGTATGATAAAGTCCAAACATTAATTCTAATTGAGGATGTGGACATCCTTTTTCCTGAAGATCGTGGATGTATTGCTGCCATACAACAAATTGCAGAGACAGCCAAGGGGCCAATTGTACTAACCTGCAATAGCAATAATCCTGCGCTGCCAGATAATTTTAGTAGATTGTGTGTTTCTTTCTCATTGCCATCCGCAAAGGAGTTGCTGTGCCACTTGTACATGGTTTGTGTCACAGAAGCAGTCAACATTCATCCTCTCATATTGGAGAAATTTATACAATCTTGTGGCGGTGATATCCGCAAAACCATCATGCATCTTCAGTTCTGGTTCCAGAGTAAAAGATTAAGAAAAGACAGAAAAGCACAGAAATTGTATAGCTCGCTTCCATTTGACCTTGAGGTTGGCCATCAGATACTGCCCAAGATGATGCCCTGGGATTTTCCCTCTCAGTTATCTGAACTAATTGAGAACGAAGTTACCAAGGTAATAACCACAATGGAGGAAAACTCTAGTTTGCAGAGGTCAGTTGAGAAGCAGTTTGACGTAAATGAAAAGCAAAGTGATTCAGAGGCGCAGCAGATGGGAGCTGATTGCATAGAGGCCAAAAAAGTAGAAATGCTTGAGAGGAATGGATCTGTTACAGAATACAGCGAATTGGAGGCTCAATTTCATGCTCTTTCTGAGATTTCAAATTCTTCATGCACCCCAGTTGCACCTTCTAATCGAAAGATTCAAAGGAAGCTTGTAGTGATGTCCTCTGGTTCTGAGGATGAGGGTTTATATAACGGGCATCCTCTAGACATGTGTGATGATGCTAACAATGGACCATCTCTTGAAGACAACGGTGATTCTCCATCTAAATTTCCAATTAATAATAAATATAGCAGCACGCCATTTCTTAATCGGCGTACCGGATTGGAGGAGTCTGAGGTGGACCTGAGTAAACGTTTAGGAACAGCTGATGGTATGTGTTTAAATGAAACATCCAAGTCATTTGATGTATCCTGCGTTCCAGAATCAACTTTCGTTCCTGAGACCATTAATGAAGTGGAGACTATCTCTGGAGCAGTGTCTTGTGGCAATCTTGCTGATCCTGTGGAAGTCTCTGTGAATAACGAGTCACTACCATTCACTTTCCGTGTCTGTAATTGCTTAACCAAGCGAGCACAAGATGATGATTTGTTGGGAAGTACCAAAATACCAGAATATTCTCAAAAAGAGATCTCGCAAGATTTAGTTGATGAAAATATGGAAACTACACCTGTGTATAATGTGATGGATGAATGCAGTCGGGTGGATTTCAAAATGAAGTCCCATTTTATCGAACCCCTTCCATCAACGGGGACTGATGTTATACATAAGCTGTGGAGAGAACTTCGTGAATGTCGAACAGATTTAAGACAGCATGTTGCCACTGAACAGCCAGGTGCTTTTCAAGTTGTTAAACTAGCTTGTGGTATGAGCAATCTAATATCAGAGGCTGACTTGCTGTTTAGCAACTACCAACAAAAAGATTGTGATATTTTGGAAGCCCCATCTCCACTTTTTAATGAAGGCACATTTAATTGGTATGATGAGCAAATGATGGTATCCACTGTTGCTGAACATGGGTTTTGTTTTTACGCTAAGCACTTGTCAGATATGGGATTGAAGTCAGGCCGCGATAACTGTGTAGATTTGACTTTGGAGATGTTGGCTTCCACTACTAACATAATGGCCTTGGGCCATTTATCTAGACAGGGCCTCACAAACCGTACTAACCCCTGTACTGAAAAGGACTTAGAGAACAGGTCAAGAAATGATTTGCCAGGCAGCCAAATGCAAACATCACTGTTCGATGTAGTCCAGTCCATTGTTCCTGCGAGATTATCCTTAGCCCTGAAAGGTGTTGCATTCAATGAATATCTATCTTCATTGCGCCTTATTGCCGGCTTAGAAGATTTCCGCATGTCACAAGGTGCTGAAAAGACTAGAAGGCGAAGGTACGTGTTGCCGAAGCCAATTCTGGCACGGGTTGCTCAACATTACTTGAGCAAGGGTACTATGACGTTGTCGCGTGAAGATATATCATTGTTGTGTGAAGGAGATCTGTACAGGAAGATTTTCCCCAAGTATGTTGCTGCCAGCAACAAGCTATATGGCGTTAAGCTTGAAACTAAAGGGTCAAATATTTCCATGAAGTAG	3444	0.4262	MVNDVAQINMAVPDLRLEAKLSAEENSRMFAGRQIHPFFSSWKVGKKPHEAAESELSLCGARRKDEEVLARAAIHVFENNQDINDTSLPDWKNWTFLGQTAKANCCPESSFSSVFEGSIEPLNIDKLHSTFYPPGCIDSQNVPSGSDQQSIESTQPQVEKSAGPAGGQTSLQSLEAELQDMKADTEQAGIFRKSDPEPQSRFLQESMRLYYHSCGDKAEGTLWTYKYKPTKAFEVCGNDESVKFLRDWLQLWHGRRYQRRKDALYRDKVDMQGDDDDHDYVCSHYDYDSEDMTEEDSLENVLLITGPIGCGKSAAVYACAQEEGFEVLELNASDCRNGTAVKQHFGDALGSRGFKRLLEHTNSSPMKKKRKLPSGLALPCNKASDALNEGVAGPIAISDDEAVCPDARSWTLPGHRNLIGYDKVQTLILIEDVDILFPEDRGCIAAIQQIAETAKGPIVLTCNSNNPALPDNFSRLCVSFSLPSAKELLCHLYMVCVTEAVNIHPLILEKFIQSCGGDIRKTIMHLQFWFQSKRLRKDRKAQKLYSSLPFDLEVGHQILPKMMPWDFPSQLSELIENEVTKVITTMEENSSLQRSVEKQFDVNEKQSDSEAQQMGADCIEAKKVEMLERNGSVTEYSELEAQFHALSEISNSSCTPVAPSNRKIQRKLVVMSSGSEDEGLYNGHPLDMCDDANNGPSLEDNGDSPSKFPINNKYSSTPFLNRRTGLEESEVDLSKRLGTADGMCLNETSKSFDVSCVPESTFVPETINEVETISGAVSCGNLADPVEVSVNNESLPFTFRVCNCLTKRAQDDDLLGSTKIPEYSQKEISQDLVDENMETTPVYNVMDECSRVDFKMKSHFIEPLPSTGTDVIHKLWRELRECRTDLRQHVATEQPGAFQVVKLACGMSNLISEADLLFSNYQQKDCDILEAPSPLFNEGTFNWYDEQMMVSTVAEHGFCFYAKHLSDMGLKSGRDNCVDLTLEMLASTTNIMALGHLSRQGLTNRTNPCTEKDLENRSRNDLPGSQMQTSLFDVVQSIVPARLSLALKGVAFNEYLSSLRLIAGLEDFRMSQGAEKTRRRRYVLPKPILARVAQHYLSKGTMTLSREDISLLCEGDLYRKIFPKYVAASNKLYGVKLETKGSNISMK	1147

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral5351g00049	1147	MobiDBLite	consensus disorder prediction	138	168	-	-
	Pral5351g00049	1147	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	222	531	IPR027417	-
	Pral5351g00049	1147	Gene3D	-	483	547	-	-
	Pral5351g00049	1147	PANTHER	CELL CYCLE CHECKPOINT PROTEIN RAD17	12	1121	IPR004582	GO:0006281
	Pral5351g00049	1147	FunFam	p-loop containing nucleoside triphosphate hydrolase superfamily protein	485	546	-	-
	Pral5351g00049	1147	Gene3D	-	221	482	IPR027417	-
	Pral5351g00049	1147	MobiDBLite	consensus disorder prediction	1003	1022	-	-
	Pral5351g00049	1147	Pfam	ATPase family associated with various cellular activities (AAA)	302	338	IPR003959	GO:0005524\|GO:0016887

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral5351g00049	Pral-Chr5351	251092	261686	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral5351g00049	223	547	Core DNA Replication Machinery Family	AT5G22010	21.341	2.87e-10	62.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral5351g00049	K26118		-	gmx:100784209	1140.56