Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5351g00017 ATGAGCAAACCTAGAACCCAAAGGAAAGACTCCAAACATGTCAACCGAAGCCAGAATCAACAACTCCAGAGAACAGAGAAACAAGCCTCTTGGGCAGCGATAAGAGGCCTGTTGCCTTGTAGAAGTGTCCAAATTCAGCAGCCGCAGCTGGAAGCAGTGAAACAACCAAAGCAGAAACAAGAGCAAAGGAAACTACAAGAAGAAGAAGAAGCAGTCTCAGAAGAAAGCAGAAACAAGTGCAAGAAAATGAGGTGCTCAGGTTCACTTTGTAATAACACCAAGATCGTGGCAAGGCCTGAAACAGTGACTCCTGACATCAACAAGGTCAAAAAGGCGTCTCTGGGTGGATGTACCTCGGCCAACAATGATGCTTCTCATTCAAACAGATCCTTGAAAGCTCCTTTGCAAGAACTGAATGGGGTGGCTGCTACTGCCTCTTCTTCTAACTCTTCTGTGAGTGGGTCTTTTAGGGGAATGCCGTTCAGGAGGTTCTCTGGTTGCTATGAGTGTCGAATGGTGGTTGACCCTCTTCTTCCTTTCACTAGAGACCCTTCTCTCAGGAGTAGCATCTACCCTTGCCCTCATTGTGGGGAGATCTTCATGAAGCCTGAAAATTTAGACCTTCATCAGGCTGTTAAACATGCAGTATCTGAACTGGGTCCAGAAGATACGAGCAAGAACATAGTGGAAATCATATTCCACTCAAGCTGGCTAAAGAAACAATCTCCAGTCTGCAAAATAGACCGCATCCTTAAAGTCCACAACACCCAGAGGACAATTACTAAATTCGAAGAGTACAGAGAGTCCATCAAAGCCAAAGCCATAAAGCTTTCCAAGAAGCACCCTCGTTGCATAGCAGACGGAAACGAGCTATTGAGGTTCCATTGCACGACCTCTTTGTGCTCACTGGGCCTAAAAGGCTCCACTAGCCTTTGTAACTCAACACCACAGTGCAGCGCGTGTGGCATAATCAAGAACGGCTTCAAGGTGTTTGCCGGTGGAAAAGGTATACTGACAACAGCGACAAGTGGGAAAGCACACGACAAAGCCGAAGTGTTAGGTGACGAGAATAATGAGAAGAGAGCAATGCTGGTGTGCAGGGTGATAGCAGGGAGGGTGAAGAAGAATATAGAGGGAGGAGGAATAATGAGTACGGAAGAGTATGATTCTTTAGCAGGGGAAGTTGGGGCTTATTCCAATTTGGAAGAGTTGTATGTGTCCAATCCTAGAGCTATTTTGCCTTGCTTCGTCGTTTTCTACTCTGGTTTTTGA 1272 0.4615 MSKPRTQRKDSKHVNRSQNQQLQRTEKQASWAAIRGLLPCRSVQIQQPQLEAVKQPKQKQEQRKLQEEEEAVSEESRNKCKKMRCSGSLCNNTKIVARPETVTPDINKVKKASLGGCTSANNDASHSNRSLKAPLQELNGVAATASSSNSSVSGSFRGMPFRRFSGCYECRMVVDPLLPFTRDPSLRSSIYPCPHCGEIFMKPENLDLHQAVKHAVSELGPEDTSKNIVEIIFHSSWLKKQSPVCKIDRILKVHNTQRTITKFEEYRESIKAKAIKLSKKHPRCIADGNELLRFHCTTSLCSLGLKGSTSLCNSTPQCSACGIIKNGFKVFAGGKGILTTATSGKAHDKAEVLGDENNEKRAMLVCRVIAGRVKKNIEGGGIMSTEEYDSLAGEVGAYSNLEELYVSNPRAILPCFVVFYSGF 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5351g00017 423 MobiDBLite consensus disorder prediction 51 77 - -
Pral5351g00017 423 ProSitePatterns Zinc finger C2H2 type domain signature. 193 214 IPR013087 -
Pral5351g00017 423 MobiDBLite consensus disorder prediction 1 15 - -
Pral5351g00017 423 Coils Coil 57 78 - -
Pral5351g00017 423 SUPERFAMILY ADP-ribosylation 216 422 - -
Pral5351g00017 423 MobiDBLite consensus disorder prediction 1 28 - -
Pral5351g00017 423 MobiDBLite consensus disorder prediction 56 77 - -
Pral5351g00017 423 ProSiteProfiles Zinc finger C2H2 type domain profile. 191 219 IPR013087 -
Pral5351g00017 423 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 82 420 - -
Pral5351g00017 423 Gene3D - 215 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5351g00017 Pral-Chr5351 94825 96602 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5351g00017 156 420 C2H2 Transcription Factor Family AT1G75710 52.740 7.15e-99 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral5351g00017 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5351g00017 - - gmx:100814186 567.77