Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5351g00011 ATGCATCATCTACCTCGATTTTTAGGTCACAGCAGGCAAACTAAGGGCATGGACCAGAAGAATGTCCGAAGAAAACCGAAGCTCGAGCGCCGTAATGCTGCTAAATACTTTGAGTATGATGTTGCATCATCTTCATCGTCGCTGGACGACTCCTCTGGCTCTCTATATACTCGATCAATGGAGTTTTATGACCGAACCAGCTTCAGAATTGAGGGAGTCGAGGGCGAGTTTGATATAATATGCAGGAATTTGGGGCTATCCGGACCAGAAGACTTCGCTATTCCGGCGGCGGCGTGGGAGGCTATGAAGGTCAGGTCGTCTTCGGATATTCTTCCGAGGTTGCAGTTGAACGATTTGGAAAGTCAGGACAAGGAGGAGGAGCTGAGAGATAACCAGTCGAATCAGTTAGTGCGTGAAAGGTGTGATAAATGTGAAGAACGGGTTACAATTGGAGATGTGAGTGAATCAGCTAAAGACGAGCCTGCTGAGACAAGTGGGAGAGGGGCTATCAAGGGTCTCCGTCCGCCGATGATTAAGCCACCGCCGGGGATGAGGATCCCAGTTATTGATAACATGTGTTCCACCTGGGATATTCTGAGAGATTTTGCTCCTCAAGCTGAAAGACAGTCATTGGAAAAGTATGAGGAGCCGAACTGTTCTGATCATGACCCAGAACGACGAAGGGAAACGGAGAGAGAAGATGAGCAGAAACAAGAAGAAGCAGGAGTACGTGAGGCGGATGGGTTTACTCCAAAGTTAGAAGAGGATAATGCATCAAGGCTTGCGGATGCTGATGCTGAGTTTTTGGGATCGGGTTCGTTTACTACGTCAAACGAAGACGATTCTTCTAGCCCCTCCACGGGTCCTAGGTCCACCAATATATCTCCTAATGTAAGATTTAGACGAATTATTGTGAATTGGCAAAAGGGCGAGCTTTTGGGACGTGGTTCATTTGGGTCAGTCTACGAAGGAATTTCTGGAGATGGATTCTTTTTTGCTGTGAAAGAAGTCTCACTGCTCGATCAAGGGAGTCAGGGGCAGCAAAGTGTCTATCAACTGGAGCAGGAGATTGATCTTTTGAGTCATTTTGAACACGAGAACATTGTTCAATACTATGGCACAGAAATGGATGAATCAAAGCTGTACATCTTTCTTGAGCTTGTTACTAAAGGTTCCCTTGCAAGCCTCTACAGGAAGTACAACCTTCGAGACTCTCAAGTGTCTGCCTACACAAGGCAGATTCTGCATGGTTTGAAGTATCTTCACGATCAAAATGTGATGCACAGGGATATTAAATGTACAAATATATTGGTGGATGCAAGCGGATCTGTCAAGCTAGCGGATTTTGGATTAGCAAAGGCAACCAAATTCAACGATATTAAATCATGCAAGGGGACAGCATTTTGGATGGCGCCTGAGATGCAAGCATTGTTTAGAATTGGAAAAGGTGAGCGCCCGCCTGTTCCTGATTCTCTTTCGAAAGATGCAAGGGATTTTATACTGCAGTGTCTGCAAGTCAATCCAGATGAGCGTCCCACTGCTACTGAGTTGCTAAACCATCCATTTGTCCAAAGGCAACTTTCCTCTTCGTCTGGCTCTGGCTCTGTATCCCCTTATATTCCTGGAAGGAGGAATTAA 1638 0.4597 MHHLPRFLGHSRQTKGMDQKNVRRKPKLERRNAAKYFEYDVASSSSSLDDSSGSLYTRSMEFYDRTSFRIEGVEGEFDIICRNLGLSGPEDFAIPAAAWEAMKVRSSSDILPRLQLNDLESQDKEEELRDNQSNQLVRERCDKCEERVTIGDVSESAKDEPAETSGRGAIKGLRPPMIKPPPGMRIPVIDNMCSTWDILRDFAPQAERQSLEKYEEPNCSDHDPERRRETEREDEQKQEEAGVREADGFTPKLEEDNASRLADADAEFLGSGSFTTSNEDDSSSPSTGPRSTNISPNVRFRRIIVNWQKGELLGRGSFGSVYEGISGDGFFFAVKEVSLLDQGSQGQQSVYQLEQEIDLLSHFEHENIVQYYGTEMDESKLYIFLELVTKGSLASLYRKYNLRDSQVSAYTRQILHGLKYLHDQNVMHRDIKCTNILVDASGSVKLADFGLAKATKFNDIKSCKGTAFWMAPEMQALFRIGKGERPPVPDSLSKDARDFILQCLQVNPDERPTATELLNHPFVQRQLSSSSGSGSVSPYIPGRRN 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5351g00011 545 SUPERFAMILY Protein kinase-like (PK-like) 282 527 IPR011009 -
Pral5351g00011 545 MobiDBLite consensus disorder prediction 210 251 - -
Pral5351g00011 545 MobiDBLite consensus disorder prediction 526 545 - -
Pral5351g00011 545 SMART serkin_6 307 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5351g00011 545 ProSitePatterns Protein kinases ATP-binding region signature. 313 335 IPR017441 GO:0005524
Pral5351g00011 545 MobiDBLite consensus disorder prediction 152 184 - -
Pral5351g00011 545 MobiDBLite consensus disorder prediction 270 295 - -
Pral5351g00011 545 ProSitePatterns Serine/Threonine protein kinases active-site signature. 426 438 IPR008271 GO:0004672|GO:0006468
Pral5351g00011 545 Gene3D Transferase(Phosphotransferase) domain 1 290 474 - -
Pral5351g00011 545 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 475 538 - -
Pral5351g00011 545 MobiDBLite consensus disorder prediction 1 27 - -
Pral5351g00011 545 Gene3D Transferase(Phosphotransferase) domain 1 475 535 - -
Pral5351g00011 545 Pfam Protein kinase domain 308 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5351g00011 545 ProSiteProfiles Protein kinase domain profile. 307 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5351g00011 Pral-Chr5351 43773 49616 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5351g00011 6 527 MAP Kinase Kinase Kinase AT4G08500 45.425 9.43e-148 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Pral5351g00011 Pkinase 7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5351g00011 K13414 - qsa:O6P43_019713 678.707