Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5351g00007 ATGCTTAAGTGGTTATTTGGTTTGTTTCCGGCGATGACCGGGGGCCGATGTCACCGGAGGAAGAAGGTGAAGGGCAGGGGTGTGGAGGGATATTGCGGAACCGAGGGCATGCCTTGCCCGGTTTCGAGGGTTCCGGTTGAATCCCCGGGGACCCAACCGGAAAATTCTGATAACGCCACTGCACTTGAAATTGATTACTACTCGCAGGCTATAAAAGCGCTCAGTGAGCGCTCGCCTTTTGATGTTGCGGAAGAGACTTCAACGTCGACGGTGCCCACACTGCCCAGTGGGTGGGCAAGCTTCTTAAACCGCCATTCTGAAAGTCGCAGGCGCCACAAGAAGTCCCATTCGGGTGCGGACAAGAAATCGTCTAGAGCATGTGATAAGTCGCGTAGTTCAAGCATTTGGGTTGAGACTGAGGATTACTTTAGAGACTTGAAATTGCCGGACATAGACACCTTGTTAGAGGCATCATCCTCTTTTAGTTTAGCTGCCCGGAAGTGTCTTTCTATTCCACCAGTGGGAAATGCTCCAAGGTCAAATGTAGCTAGTTACGAGGATGACAAGGAAACTGATGGGAACCTAAATAGCGAAGATGTCAAGAATGAGGACTGTGTCATGGAAAGTAACAGTGTTGCTGCTGGAGTTTTAGCTCAGGATGACAAGGGTCATGATACTTTGAATTCGTCTAGTAGTTTAGAATGGCTTTTAGGATGTAGGAATAAGATTTCTCTCATTACTGAGCGCCCTTCAAAGAGGAGGAAGGTTTTGGGTGTTGAAGCTGGGTTGGAGAGATTTTTTATGGCCAATCCTTGTGGTGGAGACTCTTCTCTGTGCCATTATTGCTGCAGGGGTGACACCAGTAGAGAGTCCAATCAATTAATTGTCTGCGATATTTGTAAAGTTGCAGTTCATAAGAACTGCTATGGTGTGCAAGATGATGTAGACGAGTCTTGGTTGTGCTCTTGGTGCAAGCAAAAGGATGACATTGATAAAATGGCGTATCCTTGCGTGCTTTGTCCAAAGAAGGGCGGCGCTTTAAAGCCTGTCCATAGACATGCGGAAAGCGCTGGGTCTGCGCAATTTGCTCACTTGTTTTGTTGTTTGTGGATGCCTGAGGTTTATATAGAGGATTTGAAGAAGATGGAGCCTGTTATGAATGTAGGAGGAGTCCAGGAAACCCGAAAAAAATTAGTCTGTAATATTTGCAAGTTGAAGTTTGGCGCATGTATTCGATGTACCCATGGATCCTGTAGGTCTGCTTTCCATCCTTTATGTGCCCGGGAAGCTAGCCACAGGATGGAGGTTTGGGCAAAAAATGGTTATGAAAATATTGAGTTGCGAGCGTTCTGTTCCAAGCACTCAGATATACAAGAGAACAGCACCATGTTGCCTTCAGGTGGCTCTGTAGCTTTTGGTAGTGATTTATCTTCTGCTGACAGCCTTCCAGCTGGCACACAGCAGAATTTGAAAATTGGTTGCCAAAATGGAGATGGTACTGGGATAGTTTCTGATGGCAGTCCTGATAAATTGAGTCATAGTGAACCGCCCGATGAAATTTTGTCTGATTGTCAGTTAAATGCTCATGAAACATCAGAATGCAGTGGTTTGCCACAACTAAATAATACAGCTGTGGTGGGGAGGACTGATGAAATTGCCAATGCATCTGACTCCCTTGGTTTTGCACTTGTTTTGAAAAAGTTGATAGATCGAGGAAAAGTTGATATTAAAGATGTAGCTTTGGAGATTGGCATTTCTTCAGATACATTAAGCGCAAATATTAATGATTCTTGCATGGCCCCTGATGTGCAAATCAAAATAGTCAATTGGCTAAAAGCTCATATATCAGATTCTGAGTTGCCAGATCCTGTTGCTGTTAAGTCAGTGCCTTCAAGGAGAAGAACAACTGGTAATATCAGGATTTTGAATAACAAAGCGATGTGTTCATCTGGGGTGGTGTCTAGAGAGAGCGGAATGCCAATGGACAAGTTCAAGGGAGGTCAATTTGAACATGAAAATTTGGAAACATTGAATGAAGCGTCCATGCCTGATGCAACTGAAATGAAATTAACCAAGTCTGAGGATGCTTCTTTTGACTACCAAGGGAATGCCGATAAACCTAGCAAAATAAGCTTATCTGGAGGTGTTTTGGAAGAAAAGCCTGCTAATGCTTCTATTTTTTCTGATCACCACCATTCTCCTTGTTCTGCTGCAGATTTACCCGCTTCTGATTTCATGAAGATTGAAGGAAACTCGTTTTATATTCACCCATACATCCATAAGAAGTTATCGGAGATTCGTGATGGGGTGCTTTCGAAGGATGTTATATGTCAAAGGGAGGAAGAAAATTTTTATTTGGAGGGATTCTCAGGGGCTAGTGGTGGCTCCAGTTTCCAAAATTCAGAAGTAACTTGCAGTGACATCCGTAATGTTGATAAAGTAAATACGAAGCAATTGGTTATGGCTAGAGATATGGGTTTATTAGAATTTTGTCCAAAAGATGAAGTGGAGGGTGAACTAATATATCTTCAGCATAGATTATTGCAGAATGCAGTTGCAAGGAAGAAGCTTGCTGATAATTTAATCTCTAGGATAGTTAAGAGTCTTCCGCAGGAGATTGATGCAACCCACCAGCAAAGATGGGATGCTGTACTTGTTAATCAGTACCTCCGTGATCTTAGGGAAGCAAAAAAGCAGGGAAGAAAAGAGAGAAGGCACAAGGAAGCACAGGCAGTGTTGGCTGCTGCAACTGCTGCAGCAGCAGCATCATCTAGGGTTTCTTCATTGCGGAAAGATGCCTTTGAAGAACCTGTACTGCCGGAGAATTTGTTAAAGCACACTTCCAGTGGAAGGACTGGTGTTTGCTCTCAGCCAATGCCACAGGCTAAAGAAACACTTTCTAGAGGAACTATGTTTAGGAATTCATCAGAAAAACATTCAGATTTGGGTCTGCCAGATGCAGATTTTTCTAAGGAGCATCCCAAATTGTGTGATATCTGTAGACGATCTGAAACTATATTGAACCCAATTCTCATCTGCTCCGGTTGCAAGGTTGCTGTTCACTTGAATTGCTATCGTAGTGTGAAGGAATTTACAGGTCCATGGTACTGTGAATTATGTGAGGATTTATCATTCAGAATATCTGGGCAACCTTCTATAAATTCCTGGGAGAAACCTTATTTTGTTGCGGAATGTGGGATATGTGGTGGTACTACTGGTGCTTACAGGAAGACTTCAGACGGTCATTGGGTCCATGCCTTTTGTGCTGAGTGGGTTTTTGAGTCGACTTTCAGAAGAGGACAAGTAAATGCTGTTGAAGGAATGGAAACTGTGTTGAAAGGAGTTGACACTTGTTGCATATGCCGCCGCAAGCAAGGTGTATGTTTAAAGTGTAGTTATGGCCATTGTCAGACCACATTTCATCCATCCTGTGCTAGAAGCGCTGGTTTTTACATGAATGTGAGGGCTGTCAGTGGCAAGCTGCAGCACAGGGCTTACTGTGAAAAGCACGGTTCAGAGCAGAGGGCAAAGGCTGAAAGCCAAAAACATGGAATTGAAGAGTTAAAAGGTATCAAGCAAATTAGGGTTGAGTTAGAGAGATTACGTCTCCTGTGTGAAAGAATTGTCAAACGTGAAAAGATAAAGCGGGAATTGGTTCTGTGTTCACACGACATACTTGCCTTCAAAAGAGATCACGTTGCTAGGTCTGTCTTGGTGAATAGCCCTTTCATCCTTCCTGATTGTAGTTCAGAATCAGCTACAACATCCCTTAAAGGGAACACAGAGGGATACAGATCATGTAGTGAAGCTGTCCAAAGGTCGGATGATGTGACTGTGGACAGCTCAGTTTCAGCCAAGCATCGATTACGAGTTGCTGTTACCATGGACAGTGACCCGAAGTTGGATGATGACTGTTCAACTTCACAAAGCCATTATAATCATAAGATTCCTGAGAGGGTGCAGTTTTCTGGCAAGCAGGTTCCTCACAGAGCTTCAATCATATCACGAAATCTTTCAGATGACAGTGGATGGAGATCAAAATCAAGAAAGCATCAAGAGACATTTGGAAAAGAGCTGGTTATGACGTCAGACGAAGCATCAATGAAGAATTCTATGTTACCTAAAGGATATGCATATGTTCCTGCCGATTGCCTGTCTAATGATAAGCGAACCAAGCAGGATGTATTTACGAGTGAACCAGCGGAGCATAATGGGTAA 4218 0.4355 MLKWLFGLFPAMTGGRCHRRKKVKGRGVEGYCGTEGMPCPVSRVPVESPGTQPENSDNATALEIDYYSQAIKALSERSPFDVAEETSTSTVPTLPSGWASFLNRHSESRRRHKKSHSGADKKSSRACDKSRSSSIWVETEDYFRDLKLPDIDTLLEASSSFSLAARKCLSIPPVGNAPRSNVASYEDDKETDGNLNSEDVKNEDCVMESNSVAAGVLAQDDKGHDTLNSSSSLEWLLGCRNKISLITERPSKRRKVLGVEAGLERFFMANPCGGDSSLCHYCCRGDTSRESNQLIVCDICKVAVHKNCYGVQDDVDESWLCSWCKQKDDIDKMAYPCVLCPKKGGALKPVHRHAESAGSAQFAHLFCCLWMPEVYIEDLKKMEPVMNVGGVQETRKKLVCNICKLKFGACIRCTHGSCRSAFHPLCAREASHRMEVWAKNGYENIELRAFCSKHSDIQENSTMLPSGGSVAFGSDLSSADSLPAGTQQNLKIGCQNGDGTGIVSDGSPDKLSHSEPPDEILSDCQLNAHETSECSGLPQLNNTAVVGRTDEIANASDSLGFALVLKKLIDRGKVDIKDVALEIGISSDTLSANINDSCMAPDVQIKIVNWLKAHISDSELPDPVAVKSVPSRRRTTGNIRILNNKAMCSSGVVSRESGMPMDKFKGGQFEHENLETLNEASMPDATEMKLTKSEDASFDYQGNADKPSKISLSGGVLEEKPANASIFSDHHHSPCSAADLPASDFMKIEGNSFYIHPYIHKKLSEIRDGVLSKDVICQREEENFYLEGFSGASGGSSFQNSEVTCSDIRNVDKVNTKQLVMARDMGLLEFCPKDEVEGELIYLQHRLLQNAVARKKLADNLISRIVKSLPQEIDATHQQRWDAVLVNQYLRDLREAKKQGRKERRHKEAQAVLAAATAAAAASSRVSSLRKDAFEEPVLPENLLKHTSSGRTGVCSQPMPQAKETLSRGTMFRNSSEKHSDLGLPDADFSKEHPKLCDICRRSETILNPILICSGCKVAVHLNCYRSVKEFTGPWYCELCEDLSFRISGQPSINSWEKPYFVAECGICGGTTGAYRKTSDGHWVHAFCAEWVFESTFRRGQVNAVEGMETVLKGVDTCCICRRKQGVCLKCSYGHCQTTFHPSCARSAGFYMNVRAVSGKLQHRAYCEKHGSEQRAKAESQKHGIEELKGIKQIRVELERLRLLCERIVKREKIKRELVLCSHDILAFKRDHVARSVLVNSPFILPDCSSESATTSLKGNTEGYRSCSEAVQRSDDVTVDSSVSAKHRLRVAVTMDSDPKLDDDCSTSQSHYNHKIPERVQFSGKQVPHRASIISRNLSDDSGWRSKSRKHQETFGKELVMTSDEASMKNSMLPKGYAYVPADCLSNDKRTKQDVFTSEPAEHNG 1405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5351g00007 1405 Pfam PHD-finger 292 325 - -
Pral5351g00007 1405 Pfam PHD-finger 1008 1041 - -
Pral5351g00007 1405 Coils Coil 1191 1211 - -
Pral5351g00007 1405 MobiDBLite consensus disorder prediction 105 126 - -
Pral5351g00007 1405 ProSitePatterns Zinc finger PHD-type signature. 997 1040 IPR019786 -
Pral5351g00007 1405 ProSiteProfiles Extended PHD (ePHD) domain profile. 1062 1171 IPR034732 -
Pral5351g00007 1405 ProSiteProfiles Zinc finger PHD-type profile. 994 1043 IPR019787 -
Pral5351g00007 1405 CDD ePHD 1065 1170 - -
Pral5351g00007 1405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 332 IPR013083 -
Pral5351g00007 1405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 973 1046 IPR013083 -
Pral5351g00007 1405 Pfam PHD-zinc-finger like domain 336 454 - -
Pral5351g00007 1405 Pfam PHD-zinc-finger like domain 1064 1170 - -
Pral5351g00007 1405 MobiDBLite consensus disorder prediction 183 198 - -
Pral5351g00007 1405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1062 1173 IPR013083 -
Pral5351g00007 1405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 333 457 IPR013083 -
Pral5351g00007 1405 ProSiteProfiles Extended PHD (ePHD) domain profile. 334 455 IPR034732 -
Pral5351g00007 1405 SMART PHD_3 1117 1171 IPR001965 -
Pral5351g00007 1405 SMART PHD_3 399 455 IPR001965 -
Pral5351g00007 1405 SMART PHD_3 996 1041 IPR001965 -
Pral5351g00007 1405 SMART PHD_3 278 325 IPR001965 -
Pral5351g00007 1405 SUPERFAMILY FYVE/PHD zinc finger 270 344 IPR011011 -
Pral5351g00007 1405 MobiDBLite consensus disorder prediction 179 198 - -
Pral5351g00007 1405 Coils Coil 890 910 - -
Pral5351g00007 1405 PANTHER PHD FINGER PROTEINS 103 933 - -
Pral5351g00007 1405 ProSiteProfiles Zinc finger PHD-type profile. 276 327 IPR019787 -
Pral5351g00007 1405 SUPERFAMILY FYVE/PHD zinc finger 986 1041 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5351g00007 Pral-Chr5351 18523 31186 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5351g00007 292 459 C2H2 Transcription Factor Family AT3G14740 31.579 4.12e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5351g00007 - - gmx:100775631 1684.08