Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5351g00006 ATGTTGCCTTCAGGTGGCTCTGTAGCTTTTGGTAGTGATTTATCTTCTGCTGACAGCCTTCCAGCTGGCACACAGCAGAATTTGAAAATTGGTTGCCAAAATGGAGATGGTACTGGGATAGTTTCTGATGGCAGTCCTGATAAATTGAGTCATAGTGAACCGCCCGATGAAATTTTGTCTGATTGTCAGTTAAATGCTCATGAAACATCAGAATGCAGTGGTTTGCCACAACTAAATAATACAGCTGTGGTGGGGAGGACTGATGAAATTGCCAATGCATCTGACTCCCTTGGTTTTGCACTTGTTTTGAAAAAGTTGATAGATCGAGGAAAAGTTGATATTAAAGATGTAGCTTTGGAGATTGGCATTTCTTCAGATACATTAAGCGCAAATATTAATGATTCTTGCATGGCCCCTGATGTGCAAATCAAAATAGTCAATTGGCTAAAAGCTCATGTATATACTAATGCATTTCAGAAAAGTTTGAAAGTCAAATTCAAGCCTGCCAATTCATCCAAGGATGAAAATGGAATCATTGATGGTTCTGATTCTTTACAGATATCAGATTCTGAGTTGCCAGATCCTGTTGCTGTTAAGTCAGTGCCTTCAAGGAGAAGAACAACTGGTAATATCAGGATTTTGAATAACAAAGCGATGTGTTCATCTGGGGTGGTGTCTAGAGAGAGCGGAATGCCAATGGACAAGTTCAAGGGAGGTCAATTTGAACATGAAAATTTGGAAACATTGAATGAAGCGTCCATGCCTGATGCAACTGAAATGAAATTAACCAAGTCTGAGGATGCTTCTTTTGACTACCAAGGGAATGCCGATAAACCTAGCAAAATAAGCTTATCTGGAGGTGTTTTGGAAGAAAAGCCTGCTAATGCTTCTATTTTTTCTGATCACCACCATTCTCCTTGTTCTGCTGCAGATTTACCCGCTTCTGATTTCATGAAGATTGAAGGAAACTCGTTTTATATTCACCCATACATCCATAAGAAGTTATCGGAGATTCGTGATGGGGTGCTTTCGAAGGATGTTATATGTCAAAGGGAGGAAGAAAATTTTTATTTGGAGGGATTCTCAGGGGCTAGTGGTGGCTCCAGTTTCCAAAATTCAGAAGTAACTTGCAGTGACATCCGTAATGTTGATAAAGTAAATACGAAGCAATTGGTTATGGCTAGAGATATGGGTTTATTAGAATTTTGTCCAAAAGATGAAGTGGAGGGTGAACTAATATATCTTCAGCATAGATTATTGCAGAATGCAGTTGCAAGGAAGAAGCTTGCTGATAATTTAATCTCTAGGATAGTTAAGAGTCTTCCGCAGGAGATTGATGCAACCCACCAGCAAAGATGGGATGCTGTACTTGTTAATCAGTACCTCCGTGATCTTAGGGAAGCAAAAAAGCAGGGAAGAAAAGAGAGAAGGCACAAGGAAGCACAGGCAGTGTTGGCTGCTGCAACTGCTGCAGCAGCAGCATCATCTAGGGTTTCTTCATTGCGGAAAGATGCCTTTGAAGAACCTGTACTGCCGGAGAATTTGTTAAAGCACACTTCCAGTGGAAGGACTGGTGTTTGCTCTCAGCCAATGCCACAGGCTAAAGAAACACTTTCTAGAGGAACTATGTTTAGGAATTCATCAGAAAAACATTCAGATTTGGGTCTGCCAGATGCAGATTTTTCTAAGGAGCATCCCAAATTGTGTGATATCTGTAGACGATCTGAAACTATATTGAACCCAATTCTCATCTGCTCCGGTTGCAAGGTTGCTGTTCACTTGAATTGCTATCGTAGTGTGAAGGAATTTACAGGTCCATGGTACTGTGAATTATGTGAGGATTTATCATTCAGAATATCTGGGCAACCTTCTATAAATTCCTGGGAGAAACCTTATTTTGTTGCGGAATGTGGGATATGTGGTGGTACTACTGGTGCTTACAGGAAGACTTCAGACGGTCATTGGGTCCATGCCTTTTGTGCTGAGTGGGTTTTTGAGTCGACTTTCAGAAGAGGACAAGTAAATGCTGTTGAAGGAATGGAAACTGTGTTGAAAGGAGTTGACACTTGTTGCATATGCCGCCGCAAGCAAGGTGTATGTTTAAAGTGTAGTTATGGCCATTGTCAGACCACATTTCATCCATCCTGTGCTAGAAGCGCTGGTTTTTACATGAATGTGAGGGCTGTCAGTGGCAAGCTGCAGCACAGGGCTTACTGTGAAAAGCACGGTTCAGAGCAGAGGGCAAAGGCTGAAAGCCAAAAACATGGAATTGAAGAGTTAAAAGGTATCAAGCAAATTAGGGTTGAGTTAGAGAGATTACGTCTCCTGTGTGAAAGAATTGTCAAACGTGAAAAGATAAAGCGGGAATTGGTTCTGTGTTCACACGACATACTTGCCTTCAAAAGAGATCACGTTGCTAGGTCTGTCTTGGTGAATAGCCCTTTCATCCTTCCTGATTGTAGTTCAGAATCAGCTACAACATCCCTTAAAGGGAACACAGAGGGATACAGATCATGTAGTGAAGCTGTCCAAAGGTCGGATGATGTGACTGTGGACAGCTCAGTTTCAGCCAAGCATCGATTACGAGTTGCTGTTACCATGGACAGTGACCCGAAGTTGGATGATGACTGTTCAACTTCACAAAGCCATTATAATCATAAGATTCCTGAGAGGGTGCAGTTTTCTGGCAAGCAGGTTCCTCACAGAGCTTCAATCATATCACGAAATCTTTCAGATGACAGTGGATGGAGATCAAAATCAAGAAAGCATCAAGAGACATTTGGAAAAGAGCTGGTTATGACGTCAGACGAAGCATCAATGAAGAATTCTATGTTACCTAAAGGATATGCATATGTTCCTGCCGATTGCCTGTCTAATGATAAGCGAACCAAGCAGGATGTATTTACGAGTGAACCAGCGGAGCATAATGGGTAA 2934 0.4165 MLPSGGSVAFGSDLSSADSLPAGTQQNLKIGCQNGDGTGIVSDGSPDKLSHSEPPDEILSDCQLNAHETSECSGLPQLNNTAVVGRTDEIANASDSLGFALVLKKLIDRGKVDIKDVALEIGISSDTLSANINDSCMAPDVQIKIVNWLKAHVYTNAFQKSLKVKFKPANSSKDENGIIDGSDSLQISDSELPDPVAVKSVPSRRRTTGNIRILNNKAMCSSGVVSRESGMPMDKFKGGQFEHENLETLNEASMPDATEMKLTKSEDASFDYQGNADKPSKISLSGGVLEEKPANASIFSDHHHSPCSAADLPASDFMKIEGNSFYIHPYIHKKLSEIRDGVLSKDVICQREEENFYLEGFSGASGGSSFQNSEVTCSDIRNVDKVNTKQLVMARDMGLLEFCPKDEVEGELIYLQHRLLQNAVARKKLADNLISRIVKSLPQEIDATHQQRWDAVLVNQYLRDLREAKKQGRKERRHKEAQAVLAAATAAAAASSRVSSLRKDAFEEPVLPENLLKHTSSGRTGVCSQPMPQAKETLSRGTMFRNSSEKHSDLGLPDADFSKEHPKLCDICRRSETILNPILICSGCKVAVHLNCYRSVKEFTGPWYCELCEDLSFRISGQPSINSWEKPYFVAECGICGGTTGAYRKTSDGHWVHAFCAEWVFESTFRRGQVNAVEGMETVLKGVDTCCICRRKQGVCLKCSYGHCQTTFHPSCARSAGFYMNVRAVSGKLQHRAYCEKHGSEQRAKAESQKHGIEELKGIKQIRVELERLRLLCERIVKREKIKRELVLCSHDILAFKRDHVARSVLVNSPFILPDCSSESATTSLKGNTEGYRSCSEAVQRSDDVTVDSSVSAKHRLRVAVTMDSDPKLDDDCSTSQSHYNHKIPERVQFSGKQVPHRASIISRNLSDDSGWRSKSRKHQETFGKELVMTSDEASMKNSMLPKGYAYVPADCLSNDKRTKQDVFTSEPAEHNG 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5351g00006 977 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 634 745 IPR013083 -
Pral5351g00006 977 MobiDBLite consensus disorder prediction 21 57 - -
Pral5351g00006 977 Coils Coil 462 482 - -
Pral5351g00006 977 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 545 618 IPR013083 -
Pral5351g00006 977 ProSitePatterns Zinc finger PHD-type signature. 569 612 IPR019786 -
Pral5351g00006 977 SUPERFAMILY FYVE/PHD zinc finger 558 613 IPR011011 -
Pral5351g00006 977 SMART PHD_3 689 743 IPR001965 -
Pral5351g00006 977 SMART PHD_3 568 613 IPR001965 -
Pral5351g00006 977 Pfam PHD-zinc-finger like domain 636 742 - -
Pral5351g00006 977 Coils Coil 763 783 - -
Pral5351g00006 977 PANTHER PHD FINGER PROTEINS 400 505 - -
Pral5351g00006 977 Pfam PHD-finger 580 613 - -
Pral5351g00006 977 CDD ePHD 637 742 - -
Pral5351g00006 977 ProSiteProfiles Extended PHD (ePHD) domain profile. 634 743 IPR034732 -
Pral5351g00006 977 ProSiteProfiles Zinc finger PHD-type profile. 566 615 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5351g00006 Pral-Chr5351 18523 40799 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5351g00006 554 757 C2H2 Transcription Factor Family AT3G14740 28.037 7.51e-16 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral5351g00006 zf-HC5HC2H_2 6e-23 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5351g00006 - - gmx:100777481 1242.25