Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5346g00004 ATGAGATATTCCACCACTTCCTTCTTTGCTGACAATCAAACCACTAACATCAATCACTTCTTGAAACAAGGAGATTCAAGCAAGAAGAAGGCCGTTATTATTGGTGGAGTCGTTGGAGGAACATGTTTTATTTTGATTATACTAGCATTATTTGCTTTGTATATGCGATCAAAGTCATCGAAGATGGTTCCTAAAGGTGATATTTTGGGAGCAACTGAGTTAAAAGGCCCTGTTAACTATAGGTATAAAGATCTAAAGTCAGCGACAAAAAATTTCAGTGAAAAATATAAACTAGGAGAACAAGCCTTTGGTGATTTGTACAAGGGTACTTTGAAAAATGGAAAGGTAGTTGCTATCAAGAAATTGGATTTAAGCCAATCCGAACAGATGGAGAAAGATTTTGAGAGTGAAGTGAAGTTGATAAGTAATATTCATCATCGAAATATTGTTCGACTTTTGGGATGCTGCAATAAAGGCCAAGAGAGACTTCTTGTTTACGAGTACATGAAAAACAACAATGTTGGCCAATTCTTATTTGGTGAGAATAAAGGCTCTCTGAGTTGGATGCAACGTTATGCGATAATTTTTGGCACTGCAAGAGGTTTGGCATATTTACATGAGGAATTCCATGTTTGTGTTATACATAGAGATATAAAAGCTAGCAACATCCTATTGGATGATGATTTTCAACCTAAAATTGCTGATTTTGGACTAGCAAGGCTTCTTCCAAGAGACCAATCTCATCTTAATACAAATTTTGTTGGAACAATGGGATATGTGGCACCTGAGTATGCAATGCATGGACAATTATCAGAAAAGGTTGATACTTATAGCTATGGTGTTGTAATCCTAGAAATCATAAGTGGACAAAAAAGTAGTGCATTGAAGGTTGATGATGAAAGTGAATACCTCCTCCAAAGAGCTTGGAAACTTTATGAGAGAGGAATGCATATAGCATTTGTGGACAAAACCTTAGACCCAAACGAGTATGATGCGGAAGAAGTAACGAAAATAATAGAAATTGGGCTACTTTGCACGCAAGCATCTCCTGCAGCAAGGCCAAGAATGTCTGAAGTTGTTAGAATGCTCAAAAGAAAGAGCTTAATGGAGCACAACCAGCCAACTATGCCTGTCTATGTTGATCCTACTTCTTGGCCCAAAAGAGACACTTCTGTCACTCACAGTTCGTCTTCATCAAATGCTGTTCTCTCTACTTCCATTTTATCAGGAAGGTGA 1236 0.3746 MRYSTTSFFADNQTTNINHFLKQGDSSKKKAVIIGGVVGGTCFILIILALFALYMRSKSSKMVPKGDILGATELKGPVNYRYKDLKSATKNFSEKYKLGEQAFGDLYKGTLKNGKVVAIKKLDLSQSEQMEKDFESEVKLISNIHHRNIVRLLGCCNKGQERLLVYEYMKNNNVGQFLFGENKGSLSWMQRYAIIFGTARGLAYLHEEFHVCVIHRDIKASNILLDDDFQPKIADFGLARLLPRDQSHLNTNFVGTMGYVAPEYAMHGQLSEKVDTYSYGVVILEIISGQKSSALKVDDESEYLLQRAWKLYERGMHIAFVDKTLDPNEYDAEEVTKIIEIGLLCTQASPAARPRMSEVVRMLKRKSLMEHNQPTMPVYVDPTSWPKRDTSVTHSSSSSNAVLSTSILSGR 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5346g00004 411 FunFam Cysteine-rich receptor-like protein kinase 2 169 371 - -
Pral5346g00004 411 Gene3D Phosphorylase Kinase; domain 1 56 168 - -
Pral5346g00004 411 FunFam Cysteine-rich receptor-like protein kinase 2 57 168 - -
Pral5346g00004 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Pral5346g00004 411 Gene3D Transferase(Phosphotransferase) domain 1 169 379 - -
Pral5346g00004 411 SUPERFAMILY Protein kinase-like (PK-like) 80 395 IPR011009 -
Pral5346g00004 411 CDD STKc_IRAK 98 365 - -
Pral5346g00004 411 Pfam Protein tyrosine and serine/threonine kinase 96 363 IPR001245 GO:0004672|GO:0006468
Pral5346g00004 411 SMART serkin_6 92 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5346g00004 411 ProSiteProfiles Protein kinase domain profile. 92 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5346g00004 411 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 20 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5346g00004 Pral-Chr5346 45254 62515 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5346g00004 28 409 Receptor kinase-like Gene Family AT1G56120 41.885 1.21e-95 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pral5346g00004 PK_Tyr_Ser-Thr 6.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5346g00004 - - gmx:100813585 570.081