Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5346g00002 ATGCATTCATCTTTCATTCTTCATCGCTTCCGCAAGGTGAGAAAAAACAGCATGCAGCCTCAACTACTGCAACAAAAGCCTCTGTTCTTCTTATTGAGCTTCATAATCTGGTCATGGGGGACTCTTGACGGCGTCGTTTCGGACCCTCAGACGAATCTAGTGCGACTTTGGTGTGACCCCCAAGACGGCGACAACGATGGGTCCATCATGAAGGAGATCCTTAACAAAACGTTTGGAGATCTGAGAGCTCAGATCCAAAACCAAAACAAACACTTCGCCAGAGCTCAATCAGTGGAAGCTAACATCCCCGTTTATGGCCTTTTTCAGTGCAGAAACTACCTCTCCGTCGCCGATTGCCTCGCTTGCTTTGACGTCGCCGCCGTAAACATCCACAACTGCTCCGCTAGGGCATACGCTGCCCGTCTTGTCTGCGACGGCTGCTTCCTCAGGTATGAGAGCAGTCAAAGCTTCGATTCGGCCAGCGATAGTTGGAACAACATAGTATGTGGGAATCAGACAATAAAAGATTCTCCGGCTCTTTCTTCAACTGTGCAACAAGTGCTAAGGAATCTAGGCATAGCAACCCCAAGAATCCCTGGTTCCTATGTGGCCACTAAGACGCCTGTCCCTAACAGTAATGATCTGAATATTTATGGCTTGGCTCAATGTGTTGACACTGTCCCACAAAAGGGGTGCCAGACTTGTATTAACATTGCTTTAAGCCACTTTCAGAATTGCCTCACCAACACAGATGCTAAGAGTTACGATATTGGCTGTTTCGTGAGATATTCCACCACTGCCTTCTTTGCTCTTAATCAAACAATTGATATTAACCCCTTCTTGAAACAAGGAGATATCACTGGAATTAGCATGTTGAAAGCCGCGGTTAATTACAATTACGGGGATTTGAAGTCTGCAACAAAAAATTTCAGCATTGAAAATAAACTTGGAGAAGGCGGATTTGGTGCAGTATATAAGGGTACCTTGAAGAATGGAAAAATAGTTGCGGTGAAGAAATTAACTTTACGACAATCCAAGAGGATAGAAGAAGAATTTGAGAGTGAAGTGAAACTTATACGTAACGTTCATCATCGGAATCTTGTCCGGCTTCTTGGATGTTGCAGTAAAGGCAATCAGAGAATTCTGGTTTATGAATACATGGAAAAGACCAGTCTTGACAGATTCTTATTTGAGGATATACAGCCCCTGAATATGCAATTCATGGACAGCTATCAGAAAAAGTTGATTATATAG 1254 0.4378 MHSSFILHRFRKVRKNSMQPQLLQQKPLFFLLSFIIWSWGTLDGVVSDPQTNLVRLWCDPQDGDNDGSIMKEILNKTFGDLRAQIQNQNKHFARAQSVEANIPVYGLFQCRNYLSVADCLACFDVAAVNIHNCSARAYAARLVCDGCFLRYESSQSFDSASDSWNNIVCGNQTIKDSPALSSTVQQVLRNLGIATPRIPGSYVATKTPVPNSNDLNIYGLAQCVDTVPQKGCQTCINIALSHFQNCLTNTDAKSYDIGCFVRYSTTAFFALNQTIDINPFLKQGDITGISMLKAAVNYNYGDLKSATKNFSIENKLGEGGFGAVYKGTLKNGKIVAVKKLTLRQSKRIEEEFESEVKLIRNVHHRNLVRLLGCCSKGNQRILVYEYMEKTSLDRFLFEDIQPLNMQFMDSYQKKLII 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5346g00002 417 SMART tyrkin_6 310 416 IPR020635 GO:0004713|GO:0006468
Pral5346g00002 417 SUPERFAMILY Protein kinase-like (PK-like) 292 402 IPR011009 -
Pral5346g00002 417 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 106 402 - -
Pral5346g00002 417 ProSiteProfiles Gnk2-homologous domain profile. 51 156 IPR002902 -
Pral5346g00002 417 Gene3D - 52 156 IPR038408 -
Pral5346g00002 417 Gene3D - 162 268 IPR038408 -
Pral5346g00002 417 Pfam Salt stress response/antifungal 70 153 IPR002902 -
Pral5346g00002 417 Pfam Salt stress response/antifungal 173 265 IPR002902 -
Pral5346g00002 417 ProSitePatterns Protein kinases ATP-binding region signature. 316 339 IPR017441 GO:0005524
Pral5346g00002 417 Gene3D Phosphorylase Kinase; domain 1 280 386 - -
Pral5346g00002 417 ProSiteProfiles Gnk2-homologous domain profile. 162 268 IPR002902 -
Pral5346g00002 417 FunFam Cysteine-rich receptor-like protein kinase 2 282 386 - -
Pral5346g00002 417 ProSiteProfiles Protein kinase domain profile. 310 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5346g00002 417 Pfam Protein tyrosine and serine/threonine kinase 311 406 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5346g00002 Pral-Chr5346 39431 43594 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5346g00002 29 401 Receptor kinase-like Gene Family AT5G40380 28.883 1.58e-48 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pral5346g00002 PK_Tyr_Ser-Thr 1.7e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5346g00002 - - pcin:129301903 414.846