LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral5345g00006	ATGCTGCTGCTAAACCTGCAACAAAATCCCTTGTCCTTCATCTTCTTGTTGAGCTTCACAATCTGGACATGGTGGACTCTTGACGGCGTCGTTTCAGAGCCGCAGCTCAGTTATGTGAAATCAGGGTGCAGCAGCTATAATGTCAGTGACGTGGCCATCTTCAACAAGAACCTAAACGCGTCGATGCGATGCCTGAGAGCGCAGGTCAGCAACCAGAGCAAACACTCCGCGGTGGCGCAGGCAGTGAAGGGTAGCAATCCGGCGTACGGCGTTTTTCAGTGCAGAAACTACCTTTCCATCAAAGACTGCCTCACTTGCTTCGACTTCGCCGCCGTTCATATATACGACAACTGCTCGGTCTCCGCCACTGGTGCCCGGGTCATATACGAAGGTTGCTTCCTCAGGTATGAGAGCAGTATTTTCTTCGACCAGTCCACAGATGGTGGGAACCACATTGTGTGTGGGAATCCTGTGGCTAAAAACTCCACAGAACTTGCTTCAACTGTGCAACAAGGGCTAAAGAATCTGGTAGAAGCAACACCAAGAATACCTGGTTTCTTTGCAGCCACTATAACGCCAGTACCCAACAGTAATGGTTCAAATATTTATGCCTTTGCTCAATGTCTCCAGACTGTCACTCAAAGTGGCTGCCAGGATTGCTTGGAGTCTGGCTTAAGAAATTTTCAGATTTGTATTCCCAACTCAAATGCTAAGATTTTTTATGCTGGTTGCTTCATGAGATACTCCACCTCTGCATTTTTTACTGCTAATCAGACCACCGATATCAAACGCATCTTGAAACAAGGAGATTCAAGCAAGAAGACCATTATTGGTGGAGTCGTTGGAAGTGCATCTTTTATTTTGATTCTTCTTGCATTATTTGCTTTGTATAGACGATCATTGTTCAAGAGAGTTCATAGAGTTGACATTTTGGGAGCAACTGAGTTGAAAGGCCCAGTTAACTACAGGTATAAAGATCTGAAGTCTGCAACAAAAAATTTCAGTGAAGAGAATAAATTAGGAGAAGGAGGTTTTGGTGATGTATACAAGGGTACTCTGAAAAATGGAGAAGTAATTGCCATAAAGAAATTGGCTCTAGAGCAATCCAAAAAGATGGATGAAGATTTTGAAAGTGAAGTGAAGCTAATAAGTAATGTTCATCATCGAAATCTTGTTCGACTTCTTGGATGTTGCAGCAAAGGCCAAGAGAGATTCCTTGTCTACGAGTACATGAAGAACAACAATGTTGGCCAGTTCTTATTTGGTGAAGATAGAGGTTCTCTCAATTGGAAGCAACGTTATGGTATAATTTTAGGCACTGCAAGGGGTTTGGCACATCTTCATGAGGGATTTCACGTTTGCATCATACATAGGGATATAAAGCCCAGCAACATCCTCTTGGATGATGATTTCCAGCCTAAAATTGCAGATTTTGGATTGGCAAGGCTTTTGCCAAGGGACCAATCTCATCTCAATACAAAATTTGTGGGAACAATGGGATACACTGCACCTGAGTATGTAATGCATGGACAATTATCTGAGAAGGTTGACACCTATTGCTATGGTGTTGTAGTCTTAGAAATTATAAGTGGGCAAAAGAGTGGTGAATTAAAGAATGATGATCAAGGCGAATTCCTTCTTCAAAGAGCTTGGAAACTGTACGAGAGAGGTATGCACATGGAGTTTGTGGATGAAACCTTAGATCCAAATGAGTATGATGCAGAAGAAGTAAAGAAAATCATAGAGATTGGATTGCTTTGCACGCAAGCATCTCCTGCAGCAAGGCCAACAATGTTTGAAGTTGTTGATATGATCGAAAGCAAAGGTGGCTTAATAGATCACAAGCGACCCACTATGCCTGTTTATGTTGATTCTAATGTGGGGAATAGAAGAGATGCTTAG	1902	0.4259	MLLLNLQQNPLSFIFLLSFTIWTWWTLDGVVSEPQLSYVKSGCSSYNVSDVAIFNKNLNASMRCLRAQVSNQSKHSAVAQAVKGSNPAYGVFQCRNYLSIKDCLTCFDFAAVHIYDNCSVSATGARVIYEGCFLRYESSIFFDQSTDGGNHIVCGNPVAKNSTELASTVQQGLKNLVEATPRIPGFFAATITPVPNSNGSNIYAFAQCLQTVTQSGCQDCLESGLRNFQICIPNSNAKIFYAGCFMRYSTSAFFTANQTTDIKRILKQGDSSKKTIIGGVVGSASFILILLALFALYRRSLFKRVHRVDILGATELKGPVNYRYKDLKSATKNFSEENKLGEGGFGDVYKGTLKNGEVIAIKKLALEQSKKMDEDFESEVKLISNVHHRNLVRLLGCCSKGQERFLVYEYMKNNNVGQFLFGEDRGSLNWKQRYGIILGTARGLAHLHEGFHVCIIHRDIKPSNILLDDDFQPKIADFGLARLLPRDQSHLNTKFVGTMGYTAPEYVMHGQLSEKVDTYCYGVVVLEIISGQKSGELKNDDQGEFLLQRAWKLYERGMHMEFVDETLDPNEYDAEEVKKIIEIGLLCTQASPAARPTMFEVVDMIESKGGLIDHKRPTMPVYVDSNVGNRRDA	633

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral5345g00006	633	FunFam	Cysteine-rich receptor-like protein kinase 2	411	612	-	-
	Pral5345g00006	633	Pfam	Salt stress response/antifungal	46	138	IPR002902	-
	Pral5345g00006	633	Pfam	Salt stress response/antifungal	164	250	IPR002902	-
	Pral5345g00006	633	ProSitePatterns	Protein kinases ATP-binding region signature.	340	363	IPR017441	GO:0005524
	Pral5345g00006	633	Gene3D	-	35	141	IPR038408	-
	Pral5345g00006	633	Gene3D	-	150	253	IPR038408	-
	Pral5345g00006	633	Pfam	Protein kinase domain	335	602	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral5345g00006	633	FunFam	Cysteine-rich receptor-like protein kinase 2	302	410	-	-
	Pral5345g00006	633	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	90	625	-	-
	Pral5345g00006	633	ProSiteProfiles	Gnk2-homologous domain profile.	36	141	IPR002902	-
	Pral5345g00006	633	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	455	467	IPR008271	GO:0004672\|GO:0006468
	Pral5345g00006	633	ProSiteProfiles	Gnk2-homologous domain profile.	147	253	IPR002902	-
	Pral5345g00006	633	CDD	STKc_IRAK	340	606	-	-
	Pral5345g00006	633	Gene3D	Transferase(Phosphotransferase) domain 1	411	615	-	-
	Pral5345g00006	633	SMART	serkin_6	334	605	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral5345g00006	633	SUPERFAMILY	Protein kinase-like (PK-like)	318	605	IPR011009	-
	Pral5345g00006	633	ProSiteProfiles	Protein kinase domain profile.	334	619	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral5345g00006	633	Gene3D	Phosphorylase Kinase; domain 1	301	410	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral5345g00006	Pral-Chr5345	47306	53241	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral5345g00006	10	633	Receptor kinase-like Gene Family	AT1G70520	35.881	1.27e-124	381

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pral5345g00006		Pkinase	7.5e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral5345g00006	-		-	gmx:100813585	807.749