Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5344g00005 ATGGAGGATCTGAAAGTAACAATATTAATGGTGGCAGTTCAGGTGAATGAAGTAGGACTGAACACTCTGATCAAAGCAGCCACCGACGAAGGGATGAGCGACTATGTTTTCGTTGTCTATTCAAACGCCGTGGCTTTCTCTCTTCTTCTTCCATCTTCCTTCTTTTATTATAGAAACCGACCTTCTCCCCCCATCACCTTCTCAATCATCTGCAGAATATTTCTTCTCAGCTTGCTCATTTGTGCAGCGCAGACAATGGTATATGTCGGTATTGGATATAGCTCTCCTGTTCTTTCTTCAGTCATGGGTGACCTCTCCCCAGCTTTTACCTTCCTTCTTGCCATCATTTTCAGATATGAAAAAGTGGAGATGAGGCAAGTGAGCAGTCATGCAAAGTGTATAGGGACAGTGTTGTCCATTACAGGAGCGTTAATGGTGACCCTGTACCGAGGGGAGGCAAATAGTGGAGATTCCAATCTGGAAGACGCTAAGGCAATCGTCTTGCCACAAGATGAGTGGCTTCTAGGGGGCGTTCTCCTTGCACTCGGCAGCTTTTGTCTTTCAGTCGTGTTTAACGTCAAGACATGGATAATGAAGGAGTACCCTGAGGTTATGATGATAGCAACCATATCATGCGGCTTCGTGGCGATGTTATCCGCCATGGTTTCTCTTATTGCTGAGGGAGATAATGCTCAAGCATGGACTCTTCGCGCTGATATGGAGTTGGCTGCTATATTATACTCTGGGATTATTGTGGTATCAATGAGAAGCTTGACAAATATATGGGCATGCGGAAAGAAGGGACCCGTGTACGTGGCCATGTTTATTCCTTTAGGAATGGTCATCGCACTGGCCATGGGACTTGTGTTTCTCGGCGAATCTCTCTCTCTTGGCAGCGTGATAGGGGGTGGAGTGATAACTATTGGGTTTTATGGCGTTTTATGGGGTCAGGCTCAACAGGAAAAGATGGCTTTTCAGACAAAAGTAATCTGTAGCTCTGTGTCTTCTTCTTCTAATGCAGTGCCTCTTCTACAGAACCAGTGCCTTGCAAGTTTCACAAGCCTTTGGAATGAACCACATCCCGGAATTGAGTTCTGGTTCCATTACGACTCAGAGTTAACGAGAATGGGGATGGTCGTTCTGCCATTTCTGGGAATGGTGATGGCGGAGTGTGCGCAGGTTGGCTTAATCATTGTCAGCAAAATAGTCATGTCTCAAGGTATGAGCAGCCTTGTTTTCGTCTTCTTCTCCAACTCCCTCGCTGCCCTCCTTCTGCTTCCTTCTTCCTTGCTCCTCCACAGCAGATCTGAGCGTCCCCCAATCACAATTTCTACTCTCTGTGGTTTCTTCTCACTCGGGTTGCTCGGCTATTTGGCGCAGGTATTTGGGTATGCTGGGATTTACTACAGCTCTGCTACGCTCAGCTCGGCCTTGCTCAACCTTGTCCCTGGTTTTACATTCATCCTTGCTGTTGCTTTTGGGATGGAGAGGTTAGATTGGAGAAGCTATAGTAGCGTTGCTAAATCACTAGGAACCGTAGTATCAATTGCTGGTGCATTTGTTGCAACTCTATACAAAGGCCCTCCACTTCTGGCTAGGCCATCTCCTGCAAGCTCCTCTCGACTGCAACTTTTCTCGCAAGAGTCTAATTTCATGCTTGGAGGACTATTTCTTGCGGCAGATTGTGTGATGGCTTCAGCATACATCATCATGCAGGCTAAAATTGTAAAGAAATATCCGGCAGAGTTGATTATAGTATTCTTTTATTGTTTCTTTGTGGCCATTCTATCCGGCGCAACCTGCTTGTTTCTGGAAAGAGATGCAAGTGCATGGAGCTTACAGCCCATGTTGAGATTGCTTGCAGTTTTATACTCGGGGGTTTTTGGTTCTGCATTTCAAGTTGGTGTTACTATATGGTGCCTCCACCAGACAGGACCTGTTTTTGTCTCTATGTTCAAGCCCTTGGGCATTGTTATCTCAGTGATTGCAGGTGTCATCTTCCTTGGAGATTCATTCTATCTTGGAAGTTTGGTTGGTGCTATTGTAATAGTTGTTGGGTTCTATTCTGTGTTATGGGGCAAAGCCAGAGATATTGACGATGCTGGCGTGAGAAGTTCAGAATCAAGTGGCGAAAACACTCCTCTTTTAAAGTAA 2154 0.4573 MEDLKVTILMVAVQVNEVGLNTLIKAATDEGMSDYVFVVYSNAVAFSLLLPSSFFYYRNRPSPPITFSIICRIFLLSLLICAAQTMVYVGIGYSSPVLSSVMGDLSPAFTFLLAIIFRYEKVEMRQVSSHAKCIGTVLSITGALMVTLYRGEANSGDSNLEDAKAIVLPQDEWLLGGVLLALGSFCLSVVFNVKTWIMKEYPEVMMIATISCGFVAMLSAMVSLIAEGDNAQAWTLRADMELAAILYSGIIVVSMRSLTNIWACGKKGPVYVAMFIPLGMVIALAMGLVFLGESLSLGSVIGGGVITIGFYGVLWGQAQQEKMAFQTKVICSSVSSSSNAVPLLQNQCLASFTSLWNEPHPGIEFWFHYDSELTRMGMVVLPFLGMVMAECAQVGLIIVSKIVMSQGMSSLVFVFFSNSLAALLLLPSSLLLHSRSERPPITISTLCGFFSLGLLGYLAQVFGYAGIYYSSATLSSALLNLVPGFTFILAVAFGMERLDWRSYSSVAKSLGTVVSIAGAFVATLYKGPPLLARPSPASSSRLQLFSQESNFMLGGLFLAADCVMASAYIIMQAKIVKKYPAELIIVFFYCFFVAILSGATCLFLERDASAWSLQPMLRLLAVLYSGVFGSAFQVGVTIWCLHQTGPVFVSMFKPLGIVISVIAGVIFLGDSFYLGSLVGAIVIVVGFYSVLWGKARDIDDAGVRSSESSGENTPLLK 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5344g00005 717 SUPERFAMILY Multidrug resistance efflux transporter EmrE 240 318 - -
Pral5344g00005 717 PANTHER WAT1-RELATED PROTEIN 381 698 IPR030184 GO:0016020|GO:0022857
Pral5344g00005 717 SUPERFAMILY Multidrug resistance efflux transporter EmrE 420 524 - -
Pral5344g00005 717 SUPERFAMILY Multidrug resistance efflux transporter EmrE 598 695 - -
Pral5344g00005 717 SUPERFAMILY Multidrug resistance efflux transporter EmrE 45 150 - -
Pral5344g00005 717 Pfam EamA-like transporter family 25 147 IPR000620 GO:0016020
Pral5344g00005 717 Pfam EamA-like transporter family 395 521 IPR000620 GO:0016020
Pral5344g00005 717 Pfam EamA-like transporter family 554 691 IPR000620 GO:0016020
Pral5344g00005 717 Pfam EamA-like transporter family 176 314 IPR000620 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5344g00005 Pral-Chr5344 50242 58538 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5344g00005 380 716 Nodulin-like Gene Family AT5G40240 44.606 5.48e-85 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5344g00005 - - pper:18791117 603.208