Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5343g00002 ATGGCTTCTTTCTGGTTCCTCACACTCCTTCTTAAATGCATTGATTTTCTTTCATGGCCCGTGCTTGCTTTGGGTTATCCTCTTTATGCTTCCATTGAAGCAATTGAGCATGATAGCCATTCGGACACTCGGAATTTGATCTCTTATTGGATTCTTCTCTCACTGATATACCTCTTTGAGTATCCTTTCCTCAAGCTTCTTCAATGGTTTCAGTATTGGCATTACATGAAGCTAATCATGGTCGCCTTCTTTGTGATTCCGGATTTTGGAAGATCTGCTTATGTCTATAATCACTTCGTTCAATCATGCATCCACATGAATCCTCAAGCAGTCATAAGCAGATTCAGGAACTGGAAGAACATATTTGTCAAGAAAGAAGACTTTACAATGCAGGCTGAGAAGTATATAACACGAAATGGAACTGAAGTCTTAGAGCAACTCATTGCTAGCAAGAACATAGAGAAAAGTCTCAATGCAGAAACAAGAAAATCAGTTCCAACTGCGGAGAAGAATGAGATCCTGAAGGCGAATTTTTATGTGAATCTTGATGGATGTACAAATGGAGGAAGGCTTCTCATGGAACAGAAAGACGCCAAAGATTTGGAGATGATTGAAAAAGAGCAAGTTCCTGAAGGCAAGCAAGTTAATAGCGCCTTGGAAAGACTCAAATCAAATGAAAGCATTTTATCTGCCATGGCGAAAACCGAAAAAATGGCAGCAGACACCGAACATGGAACATATAATCCTCAGATTTCTGCATCTGAGAATGTACAGAAAGAATGGACTTGTGCCATATGCCAGCTGACAATGCCTTCTGAAGCTAATTTGAATTCCCACCTGCAAGGAAGAAAGCATAAGGCTGCTTGTGAAGCACTGAATACAAAAACTAAAGGAATGCCGGTGATAGACACAGGAAGAGGAGCATCTTCTCAGGTTTCTGCATGTAAAGATGTACAGACGATGTGGACTTGTAAAATATGTCAATTGAGAATATTTTCTGAAGCTAGTTTGAATTCCCACCTGCAAGGAAGAAAGCATATGGCTGCTTGTGAAGCACTGAACGGGAAAACTAAAGGAACCGAAGTGACAGACACAGGAAGTGGAGCATCTTCTCAGGTTTCTGCATCTAAAGATGTACAGAAAATGTGGACTTGTAAAATATGTCAATTGAAAATATATTCTGAAGGTAGTTTGAATTCCCACCTGAAAGGAAAGAAGCATAAGGCTGCTTGTGAAGCACTGAACGCAAAAAGCCAGCTTGTTGCTGAGAAAGTTCCGGTGAAGAAGAATGATGAGTCCACTGGAGAAGAGGAGATGATAATCTATACGCCAAGTGCATTAGAACAGAATACCACAAACAGTCATCATCCAAAAATGGAGCATAAGAATGTTGAAACTATCAATATTAGTCAGCAGAATAAAAACAAAGACGTTGATGCCAATACCACCAAGGTGCAAGAATTGCAGAAGGACGTAGGAACATCGATTGGAATGAACAGTTCCAGATTAAGATGTGATATGTGCAATGTAAAATGCACTAGTGTAGGTGACTTGGCTTCTCACTTGCAAGGTAGCAAGCACTTGGCTCAAATTCAATTACTTACTGCCCATGGGCAATGGCCTTGTAGTCTAGTCATATAA 1641 0.4022 MASFWFLTLLLKCIDFLSWPVLALGYPLYASIEAIEHDSHSDTRNLISYWILLSLIYLFEYPFLKLLQWFQYWHYMKLIMVAFFVIPDFGRSAYVYNHFVQSCIHMNPQAVISRFRNWKNIFVKKEDFTMQAEKYITRNGTEVLEQLIASKNIEKSLNAETRKSVPTAEKNEILKANFYVNLDGCTNGGRLLMEQKDAKDLEMIEKEQVPEGKQVNSALERLKSNESILSAMAKTEKMAADTEHGTYNPQISASENVQKEWTCAICQLTMPSEANLNSHLQGRKHKAACEALNTKTKGMPVIDTGRGASSQVSACKDVQTMWTCKICQLRIFSEASLNSHLQGRKHMAACEALNGKTKGTEVTDTGSGASSQVSASKDVQKMWTCKICQLKIYSEGSLNSHLKGKKHKAACEALNAKSQLVAEKVPVKKNDESTGEEEMIIYTPSALEQNTTNSHHPKMEHKNVETINISQQNKNKDVDANTTKVQELQKDVGTSIGMNSSRLRCDMCNVKCTSVGDLASHLQGSKHLAQIQLLTAHGQWPCSLVI 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5343g00002 546 SUPERFAMILY beta-beta-alpha zinc fingers 300 356 IPR036236 -
Pral5343g00002 546 ProSitePatterns Zinc finger C2H2 type domain signature. 263 285 IPR013087 -
Pral5343g00002 546 SMART ZnF_U1_5 258 292 IPR003604 GO:0003676|GO:0008270
Pral5343g00002 546 SMART ZnF_U1_5 500 534 IPR003604 GO:0003676|GO:0008270
Pral5343g00002 546 SMART ZnF_U1_5 380 414 IPR003604 GO:0003676|GO:0008270
Pral5343g00002 546 SMART ZnF_U1_5 319 353 IPR003604 GO:0003676|GO:0008270
Pral5343g00002 546 SUPERFAMILY beta-beta-alpha zinc fingers 499 536 IPR036236 -
Pral5343g00002 546 SUPERFAMILY beta-beta-alpha zinc fingers 240 295 IPR036236 -
Pral5343g00002 546 PANTHER OS06G0651300 PROTEIN-RELATED 358 539 - -
Pral5343g00002 546 SMART c2h2final6 503 527 IPR013087 -
Pral5343g00002 546 SMART c2h2final6 261 285 IPR013087 -
Pral5343g00002 546 SMART c2h2final6 383 407 IPR013087 -
Pral5343g00002 546 SMART c2h2final6 322 346 IPR013087 -
Pral5343g00002 546 Gene3D Classic Zinc Finger 235 291 - -
Pral5343g00002 546 Gene3D Classic Zinc Finger 307 352 - -
Pral5343g00002 546 Gene3D Classic Zinc Finger 478 533 - -
Pral5343g00002 546 Gene3D Classic Zinc Finger 366 413 - -
Pral5343g00002 546 Pfam Zinc-finger of C2H2 type 322 346 - -
Pral5343g00002 546 Pfam Zinc-finger of C2H2 type 261 285 - -
Pral5343g00002 546 Pfam Zinc-finger of C2H2 type 383 407 - -
Pral5343g00002 546 Pfam Zinc-finger of C2H2 type 504 527 - -
Pral5343g00002 546 SUPERFAMILY beta-beta-alpha zinc fingers 367 418 IPR036236 -
Pral5343g00002 546 ProSitePatterns Zinc finger C2H2 type domain signature. 385 407 IPR013087 -
Pral5343g00002 546 Pfam TB2/DP1, HVA22 family 27 102 IPR004345 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5343g00002 Pral-Chr5343 9438 12732 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5343g00002 320 536 C2H2 Transcription Factor Family AT2G19380 23.729 1.84e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5343g00002 - - pcin:129306216 562.762