Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5338g00003 ATGGGTCACCACTCTTGCTGCAATCAACAGAAGGTTAAGAGAGGGCTTTGGTCCCCTGAGGAAGATGAGAAACTCATCAGATACATTACCACCCATGGCTATGGCTGCTGGAGTGAAGTCCCCGAGAAAGCTGGGCTGCAACGGTGCGGTAAGAGTTGTCGCCTGAGGTGGATTAATTATTTGAGGCCTGATATTAGAAGAGGCAGGTTTACTCCAGAAGAGGAGAAGTTAATTATAAGCCTTCATGGGGTCGTAGGCAACAGGTGGGCTCACATTGCAAGCCACTTGCCTGGAAGAACAGACAATGAGATAAAGAACTATTGGAATTCGTGGATCAAAAAGAAAATAAGAAAGCCTTCATCAGTTTCTTCAAACACAAGTGCACAAACTAGCGGTGATCATCATCATCATCATCCTCAGTATAACTTCAATAATCCCAATCAATTAGACTTTGGGAACCAAGATAACCTAACAACAAAACCACCACCAGTTCATCAAGACACTATATTTTCTTCCACATGCCCCTTATTTATGTTTGACACTAGCTCTTTAGATGGTTCTGCAACAACAACGACAATACTGGACAACCATAATGCAAGACCAGAAATGTTAATCCATCATCATCAGCAAGATGCTACTATGGGTTTAGGCACAGAAACTTGGAATCTGAGCCACCATCAAATTCAAGCCTTTCCTCCGCCTTCGTCAGCTTCTTTCACGGCGGCTTCTTCAGGCATGGTCTCTTGTAATTACCTGCCGCCATTGATAGAGAATGTGGATAACATGGTGCCGCATAATATTCATGAAGTGCAATCTTGCAGTATAGATGAAGAAGGAGAAATGGCATTAGAGTGCTTGCAGAGGCAAGAATTGAACGAGTGGGTGGACACACAGCAACAATGTCCCAACTTTATTTTCTGGGAAAATGTGGAAGGACAACTTGGTGGGGAAGAAATAGTACCAAATTCGTCAAATTTGGGAACCACACTTTCTTCTTTTCCTTCGTCGTTAAGCAGGGGAAAAGAAAATTTGCAGTCTCCTTGCCGCCTTCGCTCACACTTCCGCCTTGAAACCATGATTATTCCTGAGAAGAACCGTCGTGAGATCTGCAAATACCTCTTCAAAGAGGGAGTTTGCTATGCAAAGAAGGACTTCAATATGCCTAAGCACCCGGAGATTGATGTGCCTAATCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCCAAGGAGTACGTGCGTGAGACATTTGCTTGGATGCACTACTACTGGTACCTCACTAACGATGGCATTGAGTTCCTTAGAACTTACCTCAATCTTCCTTCCGAAATCGTACCTGCTACTTTGAAGAAACAAGCTAAGCCAGCTGGTAGACCATTTGGCGGCCCACCTGGTGACCGTCCAAGGGGTCCACCTCGCTTTGAAGGAGAACGTAGGTTTGGGGACCGTGATGGATACCGTGGAGGTCCCCGAGGACCCGGTGGTGACTTTGGAGACAAGGGTGGAGCTCCTGCTGACTACAGGCCTTCATTCGGGGGTTCTGGAGGAAGGCCTGGATTCGGTCGTGGTGCTGGTGGTTTTGGAGCACCAACAAGCTCAAATCTTTCATAA 1611 0.4581 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPSSVSSNTSAQTSGDHHHHHPQYNFNNPNQLDFGNQDNLTTKPPPVHQDTIFSSTCPLFMFDTSSLDGSATTTTILDNHNARPEMLIHHHQQDATMGLGTETWNLSHHQIQAFPPPSSASFTAASSGMVSCNYLPPLIENVDNMVPHNIHEVQSCSIDEEGEMALECLQRQELNEWVDTQQQCPNFIFWENVEGQLGGEEIVPNSSNLGTTLSSFPSSLSRGKENLQSPCRLRSHFRLETMIIPEKNRREICKYLFKEGVCYAKKDFNMPKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGERRFGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGSGGRPGFGRGAGGFGAPTSSNLS 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5338g00003 536 Gene3D - 68 141 - -
Pral5338g00003 536 MobiDBLite consensus disorder prediction 118 164 - -
Pral5338g00003 536 CDD SANT 69 112 IPR001005 -
Pral5338g00003 536 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Pral5338g00003 536 MobiDBLite consensus disorder prediction 141 164 - -
Pral5338g00003 536 Pfam Plectin/S10 domain 361 452 IPR005326 -
Pral5338g00003 536 FunFam Transcription factor MYB26 68 139 - -
Pral5338g00003 536 Gene3D - 359 462 IPR036388 -
Pral5338g00003 536 Gene3D - 6 66 - -
Pral5338g00003 536 CDD SANT 17 61 IPR001005 -
Pral5338g00003 536 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pral5338g00003 536 SMART sant 66 114 IPR001005 -
Pral5338g00003 536 SMART sant 13 63 IPR001005 -
Pral5338g00003 536 PANTHER MYB DOMAIN PROTEIN 55 1 258 - -
Pral5338g00003 536 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pral5338g00003 536 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pral5338g00003 536 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pral5338g00003 536 FunFam MYB transcription factor 6 66 - -
Pral5338g00003 536 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pral5338g00003 536 MobiDBLite consensus disorder prediction 470 486 - -
Pral5338g00003 536 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pral5338g00003 536 MobiDBLite consensus disorder prediction 449 536 - -
Pral5338g00003 536 FunFam 40S ribosomal protein S10 359 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5338g00003 Pral-Chr5338 24569 31123 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5338g00003 1 327 MYB Transcription Factor Family AT1G63910 52.703 7.69e-105 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral5338g00003 S10_plectin 2.7e-43 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5338g00003 K09422 K02947 gmx:100803556 710.294