Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5337g00082 ATGGCAAGCGAACTTGAAAAGAAAGCCAAAGAAGCGTTCTTCGACGATGACTTCTCTCTCGCTATTCAATACTACTCTCAAGCAATCGACTTGGATCCCTCCAACGCCGATCTCCTTGCCGATAGAGCTCAGGCCCTCATTAAACTCAACAACTTCACTGAAGCGGCTTCGGATGCAAACAAAGCAATCGAATTGGATCCGTCGTTGATAAAAGCGTATCAACGTAAAGGGGCCGCATGTTTAAAGCTTGGACAGTATCATAATGCGAAGGTGGCGCTTGAGACTGGTGCTTCTTTGTCTCAAAACGATTCAAGATTCACCAAGTTGATCGAAGAATGTAATCTCCATATTACGAAGGAATCCAACGGTCTCACTAGCTCTTTATCGTCAAATGGGGCAGTATTGAATGTACCGCCTAGTACAACTGAAGAAAATGAAAGATTTAGTCGTGCACATCAAGCACACACCGATACCTCTGCGAAAACAAGATACAGACATGAATACTACCAAAAGCCAGACGAAGTGGTTTTGACAATTTTTGCAAAAGGAATACCACCAAAAAATGCGGTTGTTCAGTTTGGTGAACAAATTCTGAGCGTTACTATTGATGTTCCTGGCCAAGAAGCCTACCACTATCAATCTCGATTGTTTGGAAAGATAATACCTGATAAGTGCAGATTTGAGGTGCTGTCAACCAAAATTGAAATCCGTCTAGCAAAAGCTGAAGATATTAATTGGGCATCTTTTGAATATAGCAAGGGTGCACTTCCTCAGACGAAAAGTATCTCATCAACTGGATCTCATAGGCCTGCATACCCGTCATCAAAGCCAAAGAAAGACTGGGATAAGCTGGAAGCTCAAGTGAAGAAAGAGGAGAAGGAAGAAAAGCTAGATGGTGATGCTGGTTTGAACAAGCTGTTCAGAGATATATTCCAAAATGCAGATGAAGACATGAGGAGAGCGATGACCAAGTCTTTTGTGGAGTCGAATGGAACAGTTCTTTCGACAGATTGGAAAGAAGTGGGATCAAAGAAGGTGGAAGGCAGTCCTCCAGAAGGCATGGAGATGAAGAAATGGGAATACTGA 1086 0.4282 MASELEKKAKEAFFDDDFSLAIQYYSQAIDLDPSNADLLADRAQALIKLNNFTEAASDANKAIELDPSLIKAYQRKGAACLKLGQYHNAKVALETGASLSQNDSRFTKLIEECNLHITKESNGLTSSLSSNGAVLNVPPSTTEENERFSRAHQAHTDTSAKTRYRHEYYQKPDEVVLTIFAKGIPPKNAVVQFGEQILSVTIDVPGQEAYHYQSRLFGKIIPDKCRFEVLSTKIEIRLAKAEDINWASFEYSKGALPQTKSISSTGSHRPAYPSSKPKKDWDKLEAQVKKEEKEEKLDGDAGLNKLFRDIFQNADEDMRRAMTKSFVESNGTVLSTDWKEVGSKKVEGSPPEGMEMKKWEY 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5337g00082 361 ProSiteProfiles CS domain profile. 161 250 IPR007052 -
Pral5337g00082 361 MobiDBLite consensus disorder prediction 341 361 - -
Pral5337g00082 361 CDD p23_CS_SGT1_like 167 250 - -
Pral5337g00082 361 Pfam Tetratricopeptide repeat 71 102 IPR019734 GO:0005515
Pral5337g00082 361 MobiDBLite consensus disorder prediction 138 159 - -
Pral5337g00082 361 SUPERFAMILY TPR-like 2 113 IPR011990 GO:0005515
Pral5337g00082 361 MobiDBLite consensus disorder prediction 145 159 - -
Pral5337g00082 361 Pfam Tetratricopeptide repeat 17 57 - -
Pral5337g00082 361 ProSiteProfiles SGS domain profile. 271 361 IPR007699 -
Pral5337g00082 361 PANTHER PROTEIN SGT1 HOMOLOG 1 359 IPR044563 GO:0051087
Pral5337g00082 361 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Pral5337g00082 361 FunFam Protein SGT1 homolog A 159 263 - -
Pral5337g00082 361 MobiDBLite consensus disorder prediction 259 282 - -
Pral5337g00082 361 SMART tpr_5 36 69 IPR019734 GO:0005515
Pral5337g00082 361 SMART tpr_5 2 35 IPR019734 GO:0005515
Pral5337g00082 361 SMART tpr_5 70 103 IPR019734 GO:0005515
Pral5337g00082 361 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Pral5337g00082 361 Pfam SGS domain 279 359 IPR007699 -
Pral5337g00082 361 Pfam CS domain 165 240 IPR007052 -
Pral5337g00082 361 Gene3D - 162 253 IPR008978 -
Pral5337g00082 361 Gene3D Tetratricopeptide repeat domain 1 126 IPR011990 GO:0005515
Pral5337g00082 361 SUPERFAMILY HSP20-like chaperones 154 257 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5337g00082 Pral-Chr5337 490571 493972 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5337g00082 1 112 U-box Gene Family AT3G07370 27.679 1.10e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5337g00082 K12795 - gmx:100784022 481.1