Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5337g00025 ATGGACGCAGAAGCGATCAGTATCGAGTGGGAGTCCATAAAGATGAGTGAGCAAGAGGAGGATCTCATCCACAGGATGTACAGGCTCGTCGGCAACAGGTGGGATTTGATAGCGGGACGCATTCCTGGTCGGAAAGCAGAAGAGATAGAGAGGTTCTGGATTATGAAGCACGGTGAAGCTTTCTCTGCTACAAGTCATTCAACAGCTCTCTACTAA 216 0.4907 MDAEAISIEWESIKMSEQEEDLIHRMYRLVGNRWDLIAGRIPGRKAEEIERFWIMKHGEAFSATSHSTALY 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5337g00025 71 SUPERFAMILY Homeodomain-like 16 54 IPR009057 -
Pral5337g00025 71 CDD SANT 14 53 IPR001005 -
Pral5337g00025 71 FunFam MYB-like transcription factor 14 56 - -
Pral5337g00025 71 Pfam Myb-like DNA-binding domain 14 54 IPR001005 -
Pral5337g00025 71 SMART sant 11 59 IPR001005 -
Pral5337g00025 71 Gene3D - 15 69 - -
Pral5337g00025 71 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 14 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5337g00025 Pral-Chr5337 147440 150828 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5337g00025 15 53 MYB Transcription Factor Family AT3G13540 61.538 3.01e-13 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pral5337g00025 Myb_DNA-binding 4.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5337g00025 K09422 - qsa:O6P43_034328 107.842