Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5337g00016 ATGGACGGATTTCAGGAGAGAGGTGCTCAGCTTGAACCGCATAACATTGCTGATATAGGGTCGTCTCTCTCAAATCTGATATTATCAGGTGGGACGAACCCCCTGGATTCTATTTTCTCTCACTGTCCCCAAACAAACGCCACAAGCAACCCCATGTTCGAGGCCTTAAGCTCGTGCGGTTTTGAACCTCTGGGCTCGTCGGTGTACCTTCGTCAAAGAGACATTCTGCAGAAATTCTACGAGGACAACCGAGTGAGCAGTTCATTTGGTGGTCTATCGTCGACAAATCAACGTCTAAACTATGCAGGAGCAACATCGTACTCATCATACATGAACCCCTGCAAAAAAAAGCTATACAGGGGAGTGAGACAGAGACACTGGGGAAAATGGGTTGCAGAAATCAGACTTCCCCAGAACAGAATGAGAGTGTGGTTAGGCACTTACGAAACTGCCGAAGCCGCTGCTTATGCGTACGATCGTGCCGCTTATAAGCTCCGAGGCGAATATGCTCGTTTGAATTTCCCGAATCTAAAGGACCCCAGTAAGTTGGGATTCGGAGATAGCTCCAGATTGAATGCTTTGAAGACCTCTGTGGATGCTAAGATTCAGGCTATCTGCCAGAAGGTGAAGAGGGAGAAAGCCAAGAAGAAGAGCGCCAAGAAGCCCAATCCCAGCCCCGAACAGAGCGAGAAATCACACAAGATAGACTCGTCCTCTTGTTCATCATCCTCGCTACCCTTATCCCCATTAGTTTTTGACGATACCTGGACAAACGAGTTTATTTCACCGACGATTTCAGAAGACGGAATATGGAAGGGCGAGAACTCGCCGTCCACTGTTTCAACCGATTTCCAGCCAATGGTAACAGGGGAATCGGAATTCGAAGGCTGTTCCCTGGCAAGGATGCCTTCCTTCGACCCCGAGTTAATCTGGGAAGTTCTTGCGAATTAA 951 0.4837 MDGFQERGAQLEPHNIADIGSSLSNLILSGGTNPLDSIFSHCPQTNATSNPMFEALSSCGFEPLGSSVYLRQRDILQKFYEDNRVSSSFGGLSSTNQRLNYAGATSYSSYMNPCKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYETAEAAAYAYDRAAYKLRGEYARLNFPNLKDPSKLGFGDSSRLNALKTSVDAKIQAICQKVKREKAKKKSAKKPNPSPEQSEKSHKIDSSSCSSSSLPLSPLVFDDTWTNEFISPTISEDGIWKGENSPSTVSTDFQPMVTGESEFEGCSLARMPSFDPELIWEVLAN 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5337g00016 316 SMART rav1_2 118 181 IPR001471 GO:0003700|GO:0006355
Pral5337g00016 316 Gene3D AP2/ERF domain 118 176 IPR036955 GO:0003700|GO:0006355
Pral5337g00016 316 ProSiteProfiles AP2/ERF domain profile. 118 175 IPR001471 GO:0003700|GO:0006355
Pral5337g00016 316 PRINTS Ethylene responsive element binding protein signature 119 130 IPR001471 GO:0003700|GO:0006355
Pral5337g00016 316 PRINTS Ethylene responsive element binding protein signature 141 157 IPR001471 GO:0003700|GO:0006355
Pral5337g00016 316 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 43 314 - -
Pral5337g00016 316 MobiDBLite consensus disorder prediction 210 245 - -
Pral5337g00016 316 Pfam AP2 domain 119 168 IPR001471 GO:0003700|GO:0006355
Pral5337g00016 316 CDD AP2 117 177 IPR001471 GO:0003700|GO:0006355
Pral5337g00016 316 MobiDBLite consensus disorder prediction 219 234 - -
Pral5337g00016 316 FunFam Ethylene-responsive transcription factor 2 117 176 - -
Pral5337g00016 316 SUPERFAMILY DNA-binding domain 118 175 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5337g00016 Pral-Chr5337 114632 116223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5337g00016 16 316 AP2-EREBP Transcription Factor Family AT1G64380 49.850 6.64e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral5337g00016 AP2 4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5337g00016 - - qsa:O6P43_024033 384.8