Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5337g00004 ATGGCTAGCTCCCCAGGTTGTTTCTTATTTTCATTACTGCTTTTCCTTCATCAAATAACAAGCACCGCCACCCAACAAACGTGCGGAATAAGATTATGCGGAGACTCGGCATTTGATGGGCCCTCAATTCAGTACCCTTTTTATCTGAAAGGAGTCCAAAGCGATGATTGTGGGTACCCAAACTTCGGAGTTTTCTGCGACAACCTTAACCAGACATTGATCACGCTCGGAGATGCCGGAGATTTTGTTGTCAAAGAGATCTCTTTGAAGGACCATACAACTTCGATGAATGACCCAGATAACTGCCTCCCCTCACGCTTCCTCAAAGGCTTGGACCGTCAACTTCAACGTTCGCCTTTCCAATGGAGCTCCGATTACGCTCATTTCCTCACCGTCGACTTTCTCAACTGTTCTGCCCCAGACTCCTTTCAGTTCCCTCACATCAAGATACCTTGCCTCAGCGGCACAGACAGCGACAATTCCTCGGTGATCGCTGTTTTGTTTGATCCTGCCTCTCCAACAACCTCGAGGTCGTTCCCAGGATGCCGGCATATTTTCTCGTCTTTAGTTCCAGATGATAGTTTCGAACCCGAGATATGGACAAACCCTTACTCCGATATTCGCTTGAAATGGAACGAACCCTACTGCATACTCCCCTCGTATCCGGATTCTGCTGATGATGACACTGCTTGCTATGACAATTTCCCAGGAGAACCTCCACATCACACAATTTACAAAATATTAGCGGTGGGAGTAGCTGGGGCGATATGCTTTGGTGTGGTGGGACTTGCACGTTTATTAGGGACTAAGGTGGGACCGAACGGCTTGCCACGACGGAGGACGAACGGAGCAGCGTCGGAGAGGAACACGGCGGAATCTGTTGATGTGGGAATGGGGCTTGATGAGTCAGTCATTGAGCAGTATCCGAAAACACAAGTTGGTCACAGTGGAAGATTGCCCAATCCAAGTGACAACGTTTGTTCTATATGTCTGAGCGAGTATGAACCACAGGACACATTAAGAGCCATTCCTCACTGTAATCACTATTTTCATGCCCATTGTATTGATGGGTGGCTCAAGAAGAAGGGCACGTGTCCCTTGTGTCGTCATCTTCCCCATGGATCTCCATTATTGTCCCTCCCTTCACCAGCCTCTCATCCATCGTTGACCCCCACTTAA 1179 0.4852 MASSPGCFLFSLLLFLHQITSTATQQTCGIRLCGDSAFDGPSIQYPFYLKGVQSDDCGYPNFGVFCDNLNQTLITLGDAGDFVVKEISLKDHTTSMNDPDNCLPSRFLKGLDRQLQRSPFQWSSDYAHFLTVDFLNCSAPDSFQFPHIKIPCLSGTDSDNSSVIAVLFDPASPTTSRSFPGCRHIFSSLVPDDSFEPEIWTNPYSDIRLKWNEPYCILPSYPDSADDDTACYDNFPGEPPHHTIYKILAVGVAGAICFGVVGLARLLGTKVGPNGLPRRRTNGAASERNTAESVDVGMGLDESVIEQYPKTQVGHSGRLPNPSDNVCSICLSEYEPQDTLRAIPHCNHYFHAHCIDGWLKKKGTCPLCRHLPHGSPLLSLPSPASHPSLTPT 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5337g00004 392 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 8 371 IPR046948 -
Pral5337g00004 392 SUPERFAMILY RING/U-box 321 371 - -
Pral5337g00004 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 373 IPR013083 -
Pral5337g00004 392 Pfam Ring finger domain 326 369 IPR001841 -
Pral5337g00004 392 CDD RING-H2_PA-TM-RING 326 369 - -
Pral5337g00004 392 ProSiteProfiles Zinc finger RING-type profile. 327 369 IPR001841 -
Pral5337g00004 392 SMART ring_2 327 368 IPR001841 -
Pral5337g00004 392 Pfam Wall-associated receptor kinase galacturonan-binding 33 98 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5337g00004 Pral-Chr5337 21007 22624 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5337g00004 26 372 C3H Transcription Factor Family AT2G46495 31.742 4.67e-39 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5337g00004 - - pcin:129322048 538.88