Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5337g00002 ATGACTCCCTTATTAGCCTCTCTGTTGTTATTATTATTGTTACTGATAATCCCGGGCGCAACTGTGGCTGAAGAAGTGGAGCCTTGCACGAGCAGGTCTTGTGGAGGAATCGAGATCAAGTTCCCTTTCGGTCTAAGAGGAGTCAACCAGAGTCGTCGATGTAGCTACCCAAAGTTCAGTGTTTGGTGCAATAATCAGAGCCAGACCATCTTGACGCTGCCAGAATCAGGCGACTTGGTGATCAACGACATCGATTATGCCTCCGAAACCCTTTGGGTCAACGATCCTGGTCAGTGCCTTCCAAGACGGTTCTTGAAGGGTCTCAACCTTTCTTTAGCTTCGCCCTTCCAACTCGATCCTGACCTTTACAATCTCATCAACCTCACCTTCCTTCGTTGCCCTTCTAACTTGACGCAAAATCCACTCACTTCAGTTCGTTGTCTTAACGATCCTGCCAATTCCTCTTTCGCTGTGACGTACGTTTGGATGCGATCCATTCCTCCGCCTTTGAATGAATCTTGTGAGGTCATTAATTCTTCTGTCCCCTACCCGATTTCCGCCATATACCCGTGGCCTTTCTGGGTCGATATCGGCGAGGATTTACAGTTGACGTGGGGCAGGCCACGTTGTGGCCCCTGTGAATCTCGAGGACTAGATTGTGGATTCGCCGAGCGTATGGGTCTCCGAACAGGATGTTTCTCTCGTTCCCAGGAAAGCTCAGGTATTCCAAAAGGTGTAAAATATGGGCTAACGATAGGAGTGGGAATACCTGGAGTCCTGTGTTTAATTGGGCTCGGTTGTATCATCTGCGGCAAGATACGACGTCGTCGGAATACGAGGCCCAGCACAGATCTCCCCATCACAGCATTTGCTGTCCAGTCCAGCCCATTCAGAATGGGCCTCGATGGGTCCACAATAGAAAAGTATCCCATGACTCTTCTGGGCGAGAGCAGGCGGCTACCGAAGCCCAATGACAACATTTGCTCCATATGCCTGTCGGAGTATGAGCCCAAGGAGGCCTTGAGAACCATACCCGATTGCAATCACTATTTTCACGCACACTGTATAGATGAATGGCTCAGAATGAACGCCACGTGTCCCGTTTGCCGGAATTCACCTACATTCACACCTTCTTCTGCTTCTGATTCGGCTTCATCATCTGTGTCCCCTTCTTCCTCCATATCTTCTTCACATTAG 1197 0.4954 MTPLLASLLLLLLLLIIPGATVAEEVEPCTSRSCGGIEIKFPFGLRGVNQSRRCSYPKFSVWCNNQSQTILTLPESGDLVINDIDYASETLWVNDPGQCLPRRFLKGLNLSLASPFQLDPDLYNLINLTFLRCPSNLTQNPLTSVRCLNDPANSSFAVTYVWMRSIPPPLNESCEVINSSVPYPISAIYPWPFWVDIGEDLQLTWGRPRCGPCESRGLDCGFAERMGLRTGCFSRSQESSGIPKGVKYGLTIGVGIPGVLCLIGLGCIICGKIRRRRNTRPSTDLPITAFAVQSSPFRMGLDGSTIEKYPMTLLGESRRLPKPNDNICSICLSEYEPKEALRTIPDCNHYFHAHCIDEWLRMNATCPVCRNSPTFTPSSASDSASSSVSPSSSISSSH 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5337g00002 398 CDD RING-H2_EL5-like 327 370 - -
Pral5337g00002 398 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 9 373 IPR046948 -
Pral5337g00002 398 Pfam Wall-associated receptor kinase galacturonan-binding 29 95 IPR025287 GO:0030247
Pral5337g00002 398 SMART ring_2 328 369 IPR001841 -
Pral5337g00002 398 SUPERFAMILY RING/U-box 322 376 - -
Pral5337g00002 398 ProSiteProfiles Zinc finger RING-type profile. 328 370 IPR001841 -
Pral5337g00002 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 374 IPR013083 -
Pral5337g00002 398 MobiDBLite consensus disorder prediction 375 398 - -
Pral5337g00002 398 Pfam Ring finger domain 327 370 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5337g00002 Pral-Chr5337 13776 16419 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5337g00002 23 374 C3H Transcription Factor Family AT2G25410 34.400 3.40e-53 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5337g00002 - - gmx:100810240 330.872