Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5336g00015 ATGGATATTGTCATTGACAGGGGGGTTCTGGATTGCTGTCAACACTGGTTCTGTTTTGTATGCATTGACAATTGGGCTTCCATCACAAATCTCTGCCCACTTTGCCAGAATGAGTTTCAGCTAATCACATGTGTTCCAGTATATGATACCATTGGAAGCAATAAAATCGAAGATGACGTGTTATCCAGAGATGATGACTGGTCCATTGAAGGGAGGAATAACACTCTGTCATTCCCTTCATACTATATTGATGAAAATGCAGTTGTTTGCTTGGATGGTGATGGCTGCAAAATTCGAAGTGGATCAGCAACCATTGAAGGTGATTTGAGCCTTGATACATCAATTGCTTGTGATTCATGTGATATGTGGTATCATGCTTTTTGTGTGGGATTTGATCCTGAAGGTACATCTGACGTTACATGGTTATGCCCAAGATGTGTGCCAGATAAAGTTACTGAAAACATGGATGCAAGTTCATTAGAGAAGACAACCATGGAAATCAACCCAGAAAATGGTGACAAGGAATGTCAGGCTGAGGAATCATTTTCAGGAAAAGTTTCTGTATCTGTTGCTGATGCTGGAGAGACAGCTGTTGTTGTCTCTTTGGTTGAAGGAACCCAATGGAGTCCTGTATCAAGAGAGGAGGGTTTATCACCCCTTGAAGCTTGCCAGAATCCAATGACTGAATCATGTTCTTCCATATCTGACGTCAATAATCACCAAAGTAATACAGAGAAGACTGTTAATTCACCAGGGGTGCAACAGGAGCTGGAGCTGTCCTTATCACACAACGTGGGCTGTAGCTTGTCCTCTAACACCTTAGGGCCTGATGATTTGAAGAAGGGCACTTCTGGAGAAAGGAGTGATCCAAGTAGCTTAAGTGGAACCAAAATATTTAATGAATCCCATGACAGAGCTAGTACATCTAGAAATGGATCTGATATGGGTCTTCATCTCGGTTTGTCAGTTGGCTCCTTTTTATGTGTTGATGACGCAGACATGAATGCAACAAGAGATCAAGAAACTGATCTCCAGCAGTCAAGTTTAGAAGATTTTATTTTGAAAGGAGATGAAATGGAACCAAATGCTCTTAATGACAATGCCAGAGTAAATGGGGAAAAGAGAAAGCATGCTGATTACAGTAATGATGAGGTTCGCATAGAAGTTGATAGAGATGCCGAACTCAAACCTGAAGTTGAAGTGTCACAAAAGAAACTCAAAACTGATGGCAGTGTACTGACTAATCATGAGAACGGAGCAGGTGCTCATCTTTCAGATGATACTAAAACAAACCCTTCTACTACACCCATTTCCAGTCACGATGATGTAAAGCATCATTCAACAAAGGAGAATGCTGCATCAGATATAATGAGTATAGTTAAAGGCACGAAGTGGAAGCCTTCAAAGGAAATTTCTGGATCCAAATCCTGTGATAAGTTATCCAAGAACAACGAAAATATGGCAGGTTTGAGGGTAAAAAAGATCATGAAGAGAGCTTCAGATCATGGGGAGTTATCCTTAGTTCAAAACCTAAGGGCAGAAATTAGAGAAGCTGTCCGTAACAAATCCTCTAAAAGTTTTGAAGAAAATCTTTTTGATACAAAGCTTCTTGCAGCATTCAGGGCTGCTGTAGCAGGGCCTAAAACTGAACCTCTAAATAAGCTGCCCCCTATGGCTTTGAAGGCAAAGAAGTCAATGTTGCAGAAAGGAAAAGTCCGTGAACATCTAACTAGGAAAATTTTTGGGAATTCAAATGGAAGAAGAAAGCGTGCATGGGACAGGGACTGTGAAATTGAGTTTTGGAAATATCGTTGCTCTCGAGCAGCGAAGCCTGAAAAGATTGAAACTTTGAAGTCAGTTCTGGATCTTCTAAGAACGAGTCCAGAGAGTGCAGAAGCGAAGGAGGGTCCTGAAGGTCAGGCCAAGAATTCTATTCTTTCCAGGTTGTATTTAGCAGATACATCTGTTTTCCCACGAAAAGATGATGTCAAGCCACTTTCTGTCCTTGAAACTGCTGCTAACTCTGAGCAGAATGAAAAACATAACCTTTCAGGAAAAGCATCAAATCAGTCTCTTGGTAATAGTCCTATTAAAGCAAAAGAGATAAATAATGTCTTACCAAAAGCCAGAGATTGCTTATCTGAAAACAAAGTAAATAACAAGATTGTACATAGCTCAGTTCGTGGTAATTCAGCTTCTGGTAAAGTACCTTCAAGCAGACATTCAGAAGGGGCAGCAGGTTCTTGCCCTGGTGACTCCAGAGTTGAGTCAAAGGAGTCATGCGTTAAATCGGATTGTATAAAGAGTGACAAAAGAAAATGGGCCTTGGAGGTTCTTGCAAGAAAAAGTGCTGCTGCTGGCAAGAAAATGACAAATGACAATCAGGAAGATAATGCACTTCTTGAAGGAAAATATCCTTTACTGGCCCAATTGCCAGCTGATATGAGACCAGCATTGGCGCCCAGTCGCCACAATAAAATTCCTATATCAGTAAGGCAGACACAACTTTACCGCCTGACTGAACACTTCTTGAGGAATGCAAATCTGTCAGTCATTCGCAGAACTGCAGATACAGAATTGGCCGTTGCAGATGCAATTAATATTGAAAAAGAGGTGGCTGACAGATCAAACAGCAAGCTAGTGTATCTGAATCTCTGTTCACAGGAACTCTTGCACCGCTCAAGTAATAGAAAATCCAATGGAGCAACAGATATAATTCCACAGGTCTCATCATCAGTCCCTGCTGATGGAGCAGAACAACATACTGATGATGATCCTTCAACTGACTCTGCAGTCCAAATAGCCCTTAAAAATGCTGGTCTTTCGTCCGATTCTCCTCCCTGTAGTCCGAGTGAGAAAAGAGAAATATCCAATAAACAAGTTGATGTTTCAGGGCCTGATAATATTCTCGAACTGGATTTTCAACCAGAGATGGATATTTATGGGGACTTTGATTATGATTTGGAAGATGAAGATTACATTGGTGCAGGTGTTGCTAGAGGCTTAAATTCACAAGAAGAAGAAAGCGAGTCAAAAATGAAACTCATTTTCTCTACCACGAACTTGAGGAGTTCAGATACTGTTTTGGATTGTACGGATTCTGAGAGCTTGGAAAACAATGACGTTCCACGAGACCCCTCTTGCTCATCAAATCATGATGATGCGGCTAACGCGGACCCCGCAATTGATGCAGAGACTGACAATCATCCTCCTGCTCCTTCTGAGGCCCTTCTCAGTGAGCCATGTGATGCAGAATGCGAAGAATTATATGGTCCAGAGAAAGAACCACTTACAAAAAAATTTCCGAATGAGGAATTTATAACATTACATGGAGAGGGCAAATCAGGAACTTCAACTGAAGGCAATGACTGTCATAATAAAGAACAAGCGTCAGACCAAGCAGTAAATGCGTCTGAATCTGGGAATGACGAACTTGCAAAGAACACGCCGGTCACTGCTATTGCTAACAATTCATCTAATGCATCTGATATTAGTGAAAATTTACAGAGGGAGGGAGAGAAATCTGACACCGCCCCTGAGCAGTCTGACCCTGCAAATAATGTAGTCAGAAAGGTTGAAGCTTATGTCAAGGAGCATATCAGACCATTGTGCAAGAGTGGTGTGATCACAGCTGAACAGTACAGGTGGGCCGTCGCAAAAACAACGGAAAAGGTTGTGAAGTACCATTGTAAAGCCAAGAACGCCAACTTCCTCATAAAGGAAGGCGAGAAAGTGAAGAAACTCGCAGAGCAGTATGTTGAAGCAGCCCAACACAATAGGAAAAATTGA 3789 0.4162 MDIVIDRGVLDCCQHWFCFVCIDNWASITNLCPLCQNEFQLITCVPVYDTIGSNKIEDDVLSRDDDWSIEGRNNTLSFPSYYIDENAVVCLDGDGCKIRSGSATIEGDLSLDTSIACDSCDMWYHAFCVGFDPEGTSDVTWLCPRCVPDKVTENMDASSLEKTTMEINPENGDKECQAEESFSGKVSVSVADAGETAVVVSLVEGTQWSPVSREEGLSPLEACQNPMTESCSSISDVNNHQSNTEKTVNSPGVQQELELSLSHNVGCSLSSNTLGPDDLKKGTSGERSDPSSLSGTKIFNESHDRASTSRNGSDMGLHLGLSVGSFLCVDDADMNATRDQETDLQQSSLEDFILKGDEMEPNALNDNARVNGEKRKHADYSNDEVRIEVDRDAELKPEVEVSQKKLKTDGSVLTNHENGAGAHLSDDTKTNPSTTPISSHDDVKHHSTKENAASDIMSIVKGTKWKPSKEISGSKSCDKLSKNNENMAGLRVKKIMKRASDHGELSLVQNLRAEIREAVRNKSSKSFEENLFDTKLLAAFRAAVAGPKTEPLNKLPPMALKAKKSMLQKGKVREHLTRKIFGNSNGRRKRAWDRDCEIEFWKYRCSRAAKPEKIETLKSVLDLLRTSPESAEAKEGPEGQAKNSILSRLYLADTSVFPRKDDVKPLSVLETAANSEQNEKHNLSGKASNQSLGNSPIKAKEINNVLPKARDCLSENKVNNKIVHSSVRGNSASGKVPSSRHSEGAAGSCPGDSRVESKESCVKSDCIKSDKRKWALEVLARKSAAAGKKMTNDNQEDNALLEGKYPLLAQLPADMRPALAPSRHNKIPISVRQTQLYRLTEHFLRNANLSVIRRTADTELAVADAINIEKEVADRSNSKLVYLNLCSQELLHRSSNRKSNGATDIIPQVSSSVPADGAEQHTDDDPSTDSAVQIALKNAGLSSDSPPCSPSEKREISNKQVDVSGPDNILELDFQPEMDIYGDFDYDLEDEDYIGAGVARGLNSQEEESESKMKLIFSTTNLRSSDTVLDCTDSESLENNDVPRDPSCSSNHDDAANADPAIDAETDNHPPAPSEALLSEPCDAECEELYGPEKEPLTKKFPNEEFITLHGEGKSGTSTEGNDCHNKEQASDQAVNASESGNDELAKNTPVTAIANNSSNASDISENLQREGEKSDTAPEQSDPANNVVRKVEAYVKEHIRPLCKSGVITAEQYRWAVAKTTEKVVKYHCKAKNANFLIKEGEKVKKLAEQYVEAAQHNRKN 1262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5336g00015 1262 ProSiteProfiles Zinc finger RING-type profile. 13 36 IPR001841 -
Pral5336g00015 1262 SMART PHD_3 95 147 IPR001965 -
Pral5336g00015 1262 MobiDBLite consensus disorder prediction 1109 1185 - -
Pral5336g00015 1262 MobiDBLite consensus disorder prediction 230 254 - -
Pral5336g00015 1262 MobiDBLite consensus disorder prediction 424 438 - -
Pral5336g00015 1262 MobiDBLite consensus disorder prediction 270 314 - -
Pral5336g00015 1262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 154 IPR013083 -
Pral5336g00015 1262 MobiDBLite consensus disorder prediction 400 455 - -
Pral5336g00015 1262 MobiDBLite consensus disorder prediction 896 917 - -
Pral5336g00015 1262 MobiDBLite consensus disorder prediction 1033 1054 - -
Pral5336g00015 1262 ProSiteProfiles Zinc finger PHD-type profile. 29 149 IPR019787 -
Pral5336g00015 1262 PANTHER RING FINGER PROTEIN 41, 151 78 1253 - -
Pral5336g00015 1262 MobiDBLite consensus disorder prediction 286 302 - -
Pral5336g00015 1262 MobiDBLite consensus disorder prediction 1112 1166 - -
Pral5336g00015 1262 Pfam PHD-finger 112 148 IPR019787 -
Pral5336g00015 1262 MobiDBLite consensus disorder prediction 927 954 - -
Pral5336g00015 1262 SUPERFAMILY FYVE/PHD zinc finger 112 151 IPR011011 -
Pral5336g00015 1262 MobiDBLite consensus disorder prediction 723 738 - -
Pral5336g00015 1262 MobiDBLite consensus disorder prediction 674 695 - -
Pral5336g00015 1262 ProSitePatterns Zinc finger RING-type signature. 13 22 IPR017907 -
Pral5336g00015 1262 MobiDBLite consensus disorder prediction 896 959 - -
Pral5336g00015 1262 MobiDBLite consensus disorder prediction 723 756 - -
Pral5336g00015 1262 MobiDBLite consensus disorder prediction 1033 1076 - -
Pral5336g00015 1262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 72 IPR013083 -
Pral5336g00015 1262 SUPERFAMILY RING/U-box 9 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5336g00015 Pral-Chr5336 39887 49783 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral5336g00015 PHD 3.1e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5336g00015 - - gmx:100808102 1528.46