Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5336g00014 ATGGAAGCGGATTTCGTCACCAATGGCATGTTCATAGAAGAACCCTCTGAAGCTGAGGAGAATGCGCACAATGATAATTTATTTATTGAAGGGGAAAAATGTGGAATTTGCATGGATATTGTCATTGACAGGGGGGTTCTGGATTGCTGTCAACACTGGTTCTGTTTTGTATGCATTGACAATTGGGCTTCCATCACAAATCTCTGCCCACTTTGCCAGAATGAGTTTCAGCTAATCACATGTGTTCCAGTATATGATACCATTGGAAGCAATAAAATCGAAGATGACGTGTTATCCAGAGATGATGACTGGTCCATTGAAGGGAGGAATAACACTCTGTCATTCCCTTCATACTATATTGATGAAAATGCAGTTGTTTGCTTGGATGGTGATGGCTGCAAAATTCGAAGTGGATCAGCAACCATTGAAGGTGATTTGAGCCTTGATACATCAATTGCTTGTGATTCATGTGATATGTGGTATCATGCTTTTTGTGTGGGATTTGATCCTGAAGGTACATCTGACGTTACATGGTTATGCCCAAGATGTGTGCCAGATAAAGTTACTGAAAACATGGATGCAAGTTCATTAGAGAAGACAACCATGGAAATCAACCCAGAAAATGGTGACAAGGAATGTCAGGCTGAGGAATCATTTTCAGGAAAAGTTTCTGTATCTGTTGCTGATGCTGGAGAGACAGCTGTTGTTGTCTCTTTGGTTGAAGGAACCCAATGGAGTCCTGTATCAAGAGAGGAGGGTTTATCACCCCTTGAAGCTTGCCAGAATCCAATGACTGAATCATGTTCTTCCATATCTGACGTCAATAATCACCAAAGTAATACAGAGAAGACTGTTAATTCACCAGGGGTGCAACAGGAGCTGGAGCTGTCCTTATCACACAACGTGGGCTGTAGCTTGTCCTCTAACACCTTAGGGCCTGATGATTTGAAGAAGGGCACTTCTGGAGAAAGGAGTGATCCAAGTAGCTTAAGTGGAACCAAAATATTTAATGAATCCCATGACAGAGCTAGTACATCTAGAAATGGATCTGATATGGGTCTTCATCTCGGTTTGTCAGTTGGCTCCTTTTTATGTGTTGATGACGCAGACATGAATGCAACAAGAGATCAAGAAACTGATCTCCAGCAGTCAAGTTTAGAAGATTTTATTTTGAAAGGAGATGAAATGGAACCAAATGCTCTTAATGACAATGCCAGAGTAAATGGGGAAAAGAGAAAGCATGCTGATTACAGTAATGATGAGGTTCGCATAGAAGTTGATAGAGATGCCGAACTCAAACCTGAAGTTGAAGTGTCACAAAAGAAACTCAAAACTGATGGCAGTGTACTGACTAATCATGAGAACGGAGCAGGTGCTCATCTTTCAGATGATACTAAAACAAACCCTTCTACTACACCCATTTCCAGTCACGATGATGTAAAGCATCATTCAACAAAGGAGAATGCTGCATCAGATATAATGAGTATAGTTAAAGGCACGAAGTGGAAGCCTTCAAAGGAAATTTCTGGATCCAAATCCTGTGATAAGTTATCCAAGAACAACGAAAATATGGCAGGTTTGAGGGTAAAAAAGATCATGAAGAGAGCTTCAGATCATGGGGAGTTATCCTTAGTTCAAAACCTAAGGGCAGAAATTAGAGAAGCTGTCCGTAACAAATCCTCTAAAAGTTTTGAAGAAAATCTTTTTGATACAAAGCTTCTTGCAGCATTCAGGGCTGCTGTAGCAGGGCCTAAAACTGAACCTCTAAATAAGCTGCCCCCTATGGCTTTGAAGGCAAAGAAGTCAATGTTGCAGAAAGGAAAAGTCCGTGAACATCTAACTAGGAAAATTTTTGGGAATTCAAATGGAAGAAGAAAGCGTGCATGGGACAGGGACTGTGAAATTGAGTTTTGGAAATATCGTTGCTCTCGAGCAGCGAAGCCTGAAAAGATTGAAACTTTGAAGTCAGTTCTGGATCTTCTAAGAACGAGTCCAGAGAGTGCAGAAGCGAAGGAGGGTCCTGAAGGTCAGGCCAAGAATTCTATTCTTTCCAGGTTGTATTTAGCAGATACATCTGTTTTCCCACGAAAAGATGATGTCAAGCCACTTTCTGTCCTTGAAACTGCTGCTAACTCTGAGCAGAATGAAAAACATAACCTTTCAGGAAAAGCATCAAATCAGTCTCTTGGTAATAGTCCTATTAAAGCAAAAGAGATAAATAATGTCTTACCAAAAGCCAGAGATTGCTTATCTGAAAACAAAGTAAATAACAAGATTGTACATAGCTCAGTTCGTGGTAATTCAGCTTCTGGTAAAGTACCTTCAAGCAGACATTCAGAAGGGGCAGCAGGTTCTTGCCCTGGTGACTCCAGAGTTGAGTCAAAGGAGTCATGCGTTAAATCGGATTGTATAAAGAGTGACAAAAGAAAATGGGCCTTGGAGGTTCTTGCAAGAAAAAGTGCTGCTGCTGGCAAGAAAATGACAAATGACAATCAGGAAGATAATGCACTTCTTGAAGGAAAATATCCTTTACTGGCCCAATTGCCAGCTGATATGAGACCAGCATTGGCGCCCAGTCGCCACAATAAAATTCCTATATCAGTAAGGCAGACACAACTTTACCGCCTGACTGAACACTTCTTGAGGAATGCAAATCTGTCAGTCATTCGCAGAACTGCAGATACAGAATTGGCCGTTGCAGATGCAATTAATATTGAAAAAGAGGTGGCTGACAGATCAAACAGCAAGCTAGTGTATCTGAATCTCTGTTCACAGGAACTCTTGCACCGCTCAAGTAATAGAAAATCCAATGGAGCAACAGATATAATTCCACAGGTCTCATCATCAGTCCCTGCTGATGGAGCAGAACAACATACTGATGATGATCCTTCAACTGACTCTGCAGTCCAAATAGCCCTTAAAAATGCTGGTCTTTCGTCCGATTCTCCTCCCTGTAGTCCGAGTGAGAAAAGAGAAATATCCAATAAACAAGTTGATGTTTCAGGGCCTGATAATATTCTCGAACTGGATTTTCAACCAGAGATGGATATTTATGGGGACTTTGATTATGATTTGGAAGATGAAGATTACATTGGTGCAGGTGTTGCTAGAGGCTTAAATTCACAAGAAGAAGAAAGCGAGTCAAAAATGAAACTCATTTTCTCTACCACGAACTTGAGGAGTTCAGATACTGTTTTGGATTGTACGGATTCTGAGAGCTTGGAAAACAATGACGTTCCACGAGACCCCTCTTGCTCATCAAATCATGATGATGCGGCTAACGCGGACCCCGCAATTGATGCAGAGACTGACAATCATCCTCCTGCTCCTTCTGAGGCCCTTCTCAGTGAGCCATGTGATGCAGAATGCGAAGAATTATATGGTCCAGAGAAAGAACCACTTACAAAAAAATTTCCGAATGAGGAATTTATAACATTACATGGAGAGGGCAAATCAGGAACTTCAACTGAAGGCAATGACTGTCATAATAAAGAACAAGCGTCAGACCAAGCAGTAAATGCGTCTGAATCTGGGAATGACGAACTTGCAAAGAACACGCCGGTCACTGCTATTGCTAACAATTCATCTAATGCATCTGATATTAGTGAAAATTTACAGAGGGAGGGAGAGAAATCTGACACCGCCCCTGAGCAGTCTGACCCTGCAAATAATGTAGTCAGAAAGGTTGAAGCTTATGTCAAGGAGCATATCAGACCATTGTGCAAGAGTGGTGTGATCACAGCTGAACAGTACAGGTGGGCCGTCGCAAAAACAACGGAAAAGGTTGTGAAGTACCATTGTAAAGCCAAGAACGCCAACTTCCTCATAAAGGAAGGCGAGAAAGTGAAGAAACTCGCAGAGCAGTATGTTGAAGCAGCCCAACACAATAGGAAAAATTGA 3900 0.4159 MEADFVTNGMFIEEPSEAEENAHNDNLFIEGEKCGICMDIVIDRGVLDCCQHWFCFVCIDNWASITNLCPLCQNEFQLITCVPVYDTIGSNKIEDDVLSRDDDWSIEGRNNTLSFPSYYIDENAVVCLDGDGCKIRSGSATIEGDLSLDTSIACDSCDMWYHAFCVGFDPEGTSDVTWLCPRCVPDKVTENMDASSLEKTTMEINPENGDKECQAEESFSGKVSVSVADAGETAVVVSLVEGTQWSPVSREEGLSPLEACQNPMTESCSSISDVNNHQSNTEKTVNSPGVQQELELSLSHNVGCSLSSNTLGPDDLKKGTSGERSDPSSLSGTKIFNESHDRASTSRNGSDMGLHLGLSVGSFLCVDDADMNATRDQETDLQQSSLEDFILKGDEMEPNALNDNARVNGEKRKHADYSNDEVRIEVDRDAELKPEVEVSQKKLKTDGSVLTNHENGAGAHLSDDTKTNPSTTPISSHDDVKHHSTKENAASDIMSIVKGTKWKPSKEISGSKSCDKLSKNNENMAGLRVKKIMKRASDHGELSLVQNLRAEIREAVRNKSSKSFEENLFDTKLLAAFRAAVAGPKTEPLNKLPPMALKAKKSMLQKGKVREHLTRKIFGNSNGRRKRAWDRDCEIEFWKYRCSRAAKPEKIETLKSVLDLLRTSPESAEAKEGPEGQAKNSILSRLYLADTSVFPRKDDVKPLSVLETAANSEQNEKHNLSGKASNQSLGNSPIKAKEINNVLPKARDCLSENKVNNKIVHSSVRGNSASGKVPSSRHSEGAAGSCPGDSRVESKESCVKSDCIKSDKRKWALEVLARKSAAAGKKMTNDNQEDNALLEGKYPLLAQLPADMRPALAPSRHNKIPISVRQTQLYRLTEHFLRNANLSVIRRTADTELAVADAINIEKEVADRSNSKLVYLNLCSQELLHRSSNRKSNGATDIIPQVSSSVPADGAEQHTDDDPSTDSAVQIALKNAGLSSDSPPCSPSEKREISNKQVDVSGPDNILELDFQPEMDIYGDFDYDLEDEDYIGAGVARGLNSQEEESESKMKLIFSTTNLRSSDTVLDCTDSESLENNDVPRDPSCSSNHDDAANADPAIDAETDNHPPAPSEALLSEPCDAECEELYGPEKEPLTKKFPNEEFITLHGEGKSGTSTEGNDCHNKEQASDQAVNASESGNDELAKNTPVTAIANNSSNASDISENLQREGEKSDTAPEQSDPANNVVRKVEAYVKEHIRPLCKSGVITAEQYRWAVAKTTEKVVKYHCKAKNANFLIKEGEKVKKLAEQYVEAAQHNRKN 1299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5336g00014 1299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 109 IPR013083 -
Pral5336g00014 1299 MobiDBLite consensus disorder prediction 267 291 - -
Pral5336g00014 1299 SMART ring_2 124 183 IPR001841 -
Pral5336g00014 1299 SMART ring_2 34 72 IPR001841 -
Pral5336g00014 1299 MobiDBLite consensus disorder prediction 760 793 - -
Pral5336g00014 1299 PANTHER RING FINGER PROTEIN 41, 151 115 1290 - -
Pral5336g00014 1299 SMART PHD_3 132 184 IPR001965 -
Pral5336g00014 1299 SUPERFAMILY FYVE/PHD zinc finger 149 188 IPR011011 -
Pral5336g00014 1299 MobiDBLite consensus disorder prediction 933 996 - -
Pral5336g00014 1299 Pfam Zinc finger, C3HC4 type (RING finger) 34 72 IPR018957 GO:0046872
Pral5336g00014 1299 SUPERFAMILY RING/U-box 24 79 - -
Pral5336g00014 1299 ProSitePatterns Zinc finger RING-type signature. 50 59 IPR017907 -
Pral5336g00014 1299 Pfam PHD-finger 149 185 IPR019787 -
Pral5336g00014 1299 ProSiteProfiles Zinc finger RING-type profile. 34 73 IPR001841 -
Pral5336g00014 1299 MobiDBLite consensus disorder prediction 437 492 - -
Pral5336g00014 1299 MobiDBLite consensus disorder prediction 307 351 - -
Pral5336g00014 1299 MobiDBLite consensus disorder prediction 1070 1091 - -
Pral5336g00014 1299 ProSiteProfiles Zinc finger PHD-type profile. 66 186 IPR019787 -
Pral5336g00014 1299 MobiDBLite consensus disorder prediction 323 339 - -
Pral5336g00014 1299 MobiDBLite consensus disorder prediction 760 775 - -
Pral5336g00014 1299 MobiDBLite consensus disorder prediction 1149 1203 - -
Pral5336g00014 1299 MobiDBLite consensus disorder prediction 933 954 - -
Pral5336g00014 1299 MobiDBLite consensus disorder prediction 1070 1114 - -
Pral5336g00014 1299 MobiDBLite consensus disorder prediction 711 732 - -
Pral5336g00014 1299 MobiDBLite consensus disorder prediction 1146 1222 - -
Pral5336g00014 1299 MobiDBLite consensus disorder prediction 461 475 - -
Pral5336g00014 1299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 191 IPR013083 -
Pral5336g00014 1299 MobiDBLite consensus disorder prediction 964 991 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5336g00014 Pral-Chr5336 39887 50284 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5336g00014 12 85 C3H Transcription Factor Family AT3G58030 30.263 2.78e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral5336g00014 PHD 3.2e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5336g00014 - - gmx:100808102 1560.04