Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5335g00003 ATGTTGAATCGTGGAGGGTCTTTTTCGATGTCTTCGGCTGAAGGTAGTTGTGGAGGGGATGATCTGTATGAAGAACTATGGAAGGCCTGCGCAGGACCTCTTGTCGACGTTCCTCGGGCCGGCGAGAGGGTGTTTTATTTTCCACAAGGACACATGGAGCAATTGGAGGCATCAACAAATCAAGAACTCAACCATCGGATTCCGGTGTTCAACCTTCCCTCAAAGATCCTTTGCCGTGTAGTGAACGTTCATCTGTTGGCTGAACAAGAAACTGACGAGGTTTACGCACAAATTACTCTGGTGCCAGAATCCAATCAAAATGAGCCTACTAGCCCAGATCCATGCCCTGCCGAACCTCCAAGGCCAGCAGTTCACTCATTCAGCAAGGTTTTGACGGCATCTGATACAAGCACCCATGGTGGATTCTCTGTTCTCAGAAAACACGCCACTGAATGCCTTCCTCCGCTGGACATGTCCCAACCAACTCCTACTCAGGAATTGGTTGCCAAAGATCTTCACGGTTACGAGTGGCGCTTTAAGCATATATTCAGAGGTCAGCCTCGTAGACATTTGCTCACAACTGGATGGAGTACTTTTGTTACTTCGAAGAGATTAGTTGCTGGAGATACCTTCGTGTTTTTAAGAGGGTTCAGTGGAGAATTACGTGTTGGAGTGAGGCGTCATGCTCGTCAGCAGAGTAGCATGCCATCATCCGTAATTTCCAGTCAGAGTATGCACCTAGGAGTTCTTGCAACTGCCTCTCATGCCGTTGCAACCCAAACTCTTTTTGTTGTCTACTATAAACCAAGGACAAGTCAATTTATCATAAGCGTAAACAAGTTTCTGGAGGCTATCAACAATAAGTTTACTGTTGGTATGAGGTTCAAGATGAGGTTTGAAGGGGATGAGTCTCCTGAAACTGACAAGAGATTTTCGGGCACTATTATTGGGGTGGAAGATATTTCTCCTCACTGGGTAAATTCGAGCTGGCGATCACTCAAGGTTCAGTGGGATGAACCTGCAGCTGTTCCAAGACCAGATAAGGTTTCACCATGGGAAGTGGAACCTTTTCTGGCTCCCGTTACTTCATCTTCAGTTCAACCTCCCGTTGTGAAGACCAAGCGACCTCGGCCACCCAGTGAAATTCCAGATCTTGACACAACTTCCACTGCCTCTGCCTTCTGGAATTCTGAGCTGATGCAACCTGATATTAACCGACTCGGAGCTATGGCTGAAAGCAATAGGAGTGAAAATTCTGGCATGTGGCATCACAATCAAGCTGAAATGAATAGTAAAAGCAGCAGCAACACTCCTTCAAGAAATCAAACAGAAGGGAGTTGGCTGTCGTCTCCCCATTCAACCGGTCCTCCGCAACTGTTGCAGGACACAACAGATGATGGCAAGAGCGTCTCTGCTTGGCCTGTTCACTCAGTTCATTCAACCACTCACTTGTTGCGACAGAACAATGATCATCTGCTTGAACAAGCTGGCAAGGAGAATAAAGTTGAGATTGCTACAAGCTGTCGGTTGTTTGGGATTGATCTTATTGGTCATTCCCAAAATTCAACTGCGATGGAGAAGGCACCTACACATGCAGCTGGTATACTTAATGGCCCTTCTGAAAGTCATGTCAATGCCTTGTCTGGAACTGATTCAGACCATAAGTATAACATCTCACGGGCTTCCCATGAGGGAAAACAAGAACAGCTGCAAGTAAAGGAGACTCAGAGCAAGCAAATATGTTCCAGAAGTCGCACCAAGGTTCAAATGCAGGGGGTCACAGTGGGTCGTGCTGTGGACTTGGCCATTTTGGATGGTTATGATCAACTTATAGACGAGTTGGAGGAGATGTTTGACATAAAAGGACAACTTAAAGATAGGAAGAAATGGGAAATTGTCTTCACTGATGACGAAGGGGATATGATGCTTGTGGGTGATGATCCATGGCCTGAATTCTGTAATATGGTCAGAAGAATCTTCATTTGTTCCAGCCAGGATGTGAAGAGGATGAGTGCGGGAAGCAAATTGCCTATTTCATCAATGGAAGGTGATGGGACTGTAATAAGTGGGAGCACAGCTGAAACCTGA 2088 0.4626 MLNRGGSFSMSSAEGSCGGDDLYEELWKACAGPLVDVPRAGERVFYFPQGHMEQLEASTNQELNHRIPVFNLPSKILCRVVNVHLLAEQETDEVYAQITLVPESNQNEPTSPDPCPAEPPRPAVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGFSGELRVGVRRHARQQSSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIISVNKFLEAINNKFTVGMRFKMRFEGDESPETDKRFSGTIIGVEDISPHWVNSSWRSLKVQWDEPAAVPRPDKVSPWEVEPFLAPVTSSSVQPPVVKTKRPRPPSEIPDLDTTSTASAFWNSELMQPDINRLGAMAESNRSENSGMWHHNQAEMNSKSSSNTPSRNQTEGSWLSSPHSTGPPQLLQDTTDDGKSVSAWPVHSVHSTTHLLRQNNDHLLEQAGKENKVEIATSCRLFGIDLIGHSQNSTAMEKAPTHAAGILNGPSESHVNALSGTDSDHKYNISRASHEGKQEQLQVKETQSKQICSRSRTKVQMQGVTVGRAVDLAILDGYDQLIDELEEMFDIKGQLKDRKKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVKRMSAGSKLPISSMEGDGTVISGSTAET 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5335g00003 695 SUPERFAMILY DNA-binding pseudobarrel domain 118 256 IPR015300 -
Pral5335g00003 695 FunFam Auxin response factor 125 229 - -
Pral5335g00003 695 Pfam AUX/IAA family 626 667 IPR033389 -
Pral5335g00003 695 Pfam AUX/IAA family 561 619 IPR033389 -
Pral5335g00003 695 MobiDBLite consensus disorder prediction 103 123 - -
Pral5335g00003 695 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 671 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pral5335g00003 695 FunFam Auxin response factor 578 671 - -
Pral5335g00003 695 FunFam Auxin response factor 288 361 - -
Pral5335g00003 695 SMART B3_2 127 229 IPR003340 GO:0003677
Pral5335g00003 695 ProSiteProfiles PB1 domain profile. 583 664 IPR000270 GO:0005515
Pral5335g00003 695 CDD B3_DNA 125 227 IPR003340 GO:0003677
Pral5335g00003 695 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Pral5335g00003 695 Gene3D - 579 671 - -
Pral5335g00003 695 Gene3D - 124 229 IPR015300 -
Pral5335g00003 695 SUPERFAMILY CAD & PB1 domains 584 659 - -
Pral5335g00003 695 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Pral5335g00003 695 Pfam Auxin response factor 253 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pral5335g00003 695 MobiDBLite consensus disorder prediction 426 472 - -
Pral5335g00003 695 MobiDBLite consensus disorder prediction 363 387 - -
Pral5335g00003 695 Gene3D - 288 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5335g00003 Pral-Chr5335 7705 12275 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5335g00003 18 676 B3 DNA Binding Superfamily AT4G23980 59.670 0.0 726
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pral5335g00003 AUX_IAA 9.9e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5335g00003 K14486 - gmx:100803911 1044.26