Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5335g00002 ATGTTGAATCGTGGAGGGTCTTTTTCGATGTCTTCGGCTGAAGGTAGTTGTGGAGGGGATGATCTGTATGAAGAACTATGGAAGGCCTGCGCAGGACCTCTTGTCGACGTTCCTCGGGCCGGCGAGAGGGTGTTTTATTTTCCACAAGGACACATGGAGCAATTGGAGGCATCAACAAATCAAGAACTCAACCATCGGATTCCGGTGTTCAACCTTCCCTCAAAGATCCTTTGCCGTGTAGTGAACGTTCATCTGTTGGCTGAACAAGAAACTGACGAGGTTTACGCACAAATTACTCTGGTGCCAGAATCCAATCAAAATGAGCCTACTAGCCCAGATCCATGCCCTGCCGAACCTCCAAGGCCAGCAGTTCACTCATTCAGCAAGGTTTTGACGGCATCTGATACAAGCACCCATGGTGGATTCTCTGTTCTCAGAAAACACGCCACTGAATGCCTTCCTCCGCTGGACATGTCCCAACCAACTCCTACTCAGGAATTGGTTGCCAAAGATCTTCACGGTTACGAGTGGCGCTTTAAGCATATATTCAGAGGTCAGCCTCGTAGACATTTGCTCACAACTGGATGGAGTACTTTTGTTACTTCGAAGAGATTAGTTGCTGGAGATACCTTCGTGTTTTTAAGAGGGTTCAGTGGAGAATTACGTGTTGGAGTGAGGCGTCATGCTCGTCAGCAGAGTAGCATGCCATCATCCGTAATTTCCAGTCAGAGTATGCACCTAGGAGTTCTTGCAACTGCCTCTCATGCCGTTGCAACCCAAACTCTTTTTGTTGTCTACTATAAACCAAGGACAAGTCAATTTATCATAAGCGTAAACAAGTTTCTGGAGGCTATCAACAATAAGTTTACTGTTGGTATGAGGTTCAAGATGAGGTTTGAAGGGGATGAGTCTCCTGAAACTGACAAGAGATTTTCGGGCACTATTATTGGGGTGGAAGATATTTCTCCTCACTGGGTAAATTCGAGCTGGCGATCACTCAAGGTTCAGTGGGATGAACCTGCAGCTGTTCCAAGACCAGATAAGGTTTCACCATGGGAAGTGGAACCTTTTCTGGCTCCCGTTACTTCATCTTCAGTTCAACCTCCCGTTGTGAAGACCAAGCGACCTCGGCCACCCAGTGAAATTCCAGATCTTGCTTCCACTGCCTCTGCCTTCTGGAATTCTGAGCTGATGCAACCTGATATTAACCGACTCGGAGCTATGGCTGAAAGCAATAGGAGTGAAAATTCTGGCATGTGGCATCACAATCAAGCTGAAATGAATAGTAAAAGCAGCAGCAACACTCCTTCAAGAAATCAAACAGAAGGGAGTTGGCTGTCGTCTCCCCATTCAACCGGTCCTCCGCAACTGTTGCAGGACACAACAGATGATGGCAAGAGCGTCTCTGCTTGGCCTGTTCACTCAGTTCATTCAACCACTCACTTGTTGCGACAGAACAATGATCATCTGCTTGAACAAGCTGGCAAGGAGAATAAAGTTGAGATTGCTACAAGCTGTCGGTTGTTTGGGATTGATCTTATTGGTCATTCCCAAAATTCAACTGCGATGGAGAAGGCACCTACACATGCAGCTGGTATACTTAATGGCCCTTCTGAAAGTCATGTCAATGCCTTGTCTGGAACTGATTCAGACCATAAGTATAACATCTCACGGGCTTCCCATGAGGGAAAACAAGAACAGCTGCAAGTAAAGGAGACTCAGAGCAAGCAAATATGTTCCAGAAGTCGCACCAAGGTTCAAATGCAGGGGGTCACAGTGGGTCGTGCTGTGGACTTGGCCATTTTGGATGGTTATGATCAACTTATAGACGAGTTGGAGGAGATGTTTGACATAAAAGGACAACTTAAAGATAGGAAGAAATGGGAAATTGTCTTCACTGATGACGAAGGGGATATGATGCTTGTGGGTGATGATCCATGGCCTGAATTCTGTAATATGGTCAGAAGAATCTTCATTTGTTCCAGCCAGGATGTGAAGAGGATGAGTGCGGGAAGCAAATTGCCTATTTCATCAATGGAAGGTGATGGGACTGTAATAAGTGGGAGCACAGCTGAAACCTGA 2082 0.463 MLNRGGSFSMSSAEGSCGGDDLYEELWKACAGPLVDVPRAGERVFYFPQGHMEQLEASTNQELNHRIPVFNLPSKILCRVVNVHLLAEQETDEVYAQITLVPESNQNEPTSPDPCPAEPPRPAVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGFSGELRVGVRRHARQQSSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIISVNKFLEAINNKFTVGMRFKMRFEGDESPETDKRFSGTIIGVEDISPHWVNSSWRSLKVQWDEPAAVPRPDKVSPWEVEPFLAPVTSSSVQPPVVKTKRPRPPSEIPDLASTASAFWNSELMQPDINRLGAMAESNRSENSGMWHHNQAEMNSKSSSNTPSRNQTEGSWLSSPHSTGPPQLLQDTTDDGKSVSAWPVHSVHSTTHLLRQNNDHLLEQAGKENKVEIATSCRLFGIDLIGHSQNSTAMEKAPTHAAGILNGPSESHVNALSGTDSDHKYNISRASHEGKQEQLQVKETQSKQICSRSRTKVQMQGVTVGRAVDLAILDGYDQLIDELEEMFDIKGQLKDRKKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVKRMSAGSKLPISSMEGDGTVISGSTAET 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5335g00002 693 SUPERFAMILY DNA-binding pseudobarrel domain 118 256 IPR015300 -
Pral5335g00002 693 ProSiteProfiles PB1 domain profile. 581 662 IPR000270 GO:0005515
Pral5335g00002 693 FunFam Auxin response factor 125 229 - -
Pral5335g00002 693 Gene3D - 577 669 - -
Pral5335g00002 693 MobiDBLite consensus disorder prediction 103 123 - -
Pral5335g00002 693 FunFam Auxin response factor 288 361 - -
Pral5335g00002 693 SMART B3_2 127 229 IPR003340 GO:0003677
Pral5335g00002 693 CDD B3_DNA 125 227 IPR003340 GO:0003677
Pral5335g00002 693 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Pral5335g00002 693 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Pral5335g00002 693 MobiDBLite consensus disorder prediction 424 469 - -
Pral5335g00002 693 Gene3D - 124 229 IPR015300 -
Pral5335g00002 693 SUPERFAMILY CAD & PB1 domains 582 657 - -
Pral5335g00002 693 FunFam Auxin response factor 576 669 - -
Pral5335g00002 693 Pfam Auxin response factor 253 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pral5335g00002 693 Pfam AUX/IAA family 559 617 IPR033389 -
Pral5335g00002 693 Pfam AUX/IAA family 624 665 IPR033389 -
Pral5335g00002 693 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 669 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pral5335g00002 693 MobiDBLite consensus disorder prediction 363 385 - -
Pral5335g00002 693 Gene3D - 288 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5335g00002 Pral-Chr5335 7705 12279 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5335g00002 18 674 B3 DNA Binding Superfamily AT4G23980 59.850 0.0 731
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pral5335g00002 AUX_IAA 5.9e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5335g00002 K14486 - gmx:100803911 1033.09