Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5334g00046 TTGGAGGCATCAACAAATCAAGAACTCAACCATCGGATTCCGGTGTTCAACCTTCCCTCAAAGATCCTTTGCCGTGTAGTGAACGTTCATCTGTTGGCTGAACAAGAAACTGACGAGGTTTACGCACAAATACTCTGGTGCCAGAATCCATGTAAGGATGTAGCTGCCTTCTTTCTGATTTCAAAAATTTTCGTGGTCAACCTTAGATTCTTTCTACTACAAAATGAGCCTACTAGCCCAGATCCATGCCCTGCCGAACCTCCAAGGCCAGCAGTTCACTCATTCAGCAAGGTTTTGACGGCATCTGATACAAGCACCCATGGTGGATTCTCTGTTCTCAGAAAACACGCCACTGAATGCCTTCCTCCGCTGGACATGTCCCAACCAACTCCTACTCAGGAATTGGTTGCCAAAGATCTTCACGGTTACGAGTGGCGCTTTAAGCATATATTCAGAGGTCAGCCTCGTAGACATTTGCTCACAACTGGATGGAGTACTTTTGTTACTTCGAAGAGATTAGTTGCTGGAGATACCTTCGTGTTTTTAAGAGGGTTCAGTGGAGAATTACGTGTTGGAGTGAGGCGTCATGCTCGTCAGCAGAGTAGCATGCCATCATCCGTAATTTCCAGTCAGAGTATGCACCTAGGAGTTCTTGCAACTGCCTCTCATGCCGTTGCAACCCAAACTCTTTTTGTTGTCTACTATAAACCAAGGACAAGTCAATTTATCATAAGCGTAAACAAGTTTCTGGAGGCTATCAACAATAAGTTTACTGTTGGTATGAGGTTCAAGATGAGGTTTGAAGGGGATGAGTCTCCTGAAACTGACAAGAGATTTTCGGGCACTATTATTGGAGTGGAAGATATTTCTCCTCACTGGGTAAATTCGAGCTGGCGATCACTCAAGGTTCAGTGGGATGAACCTGCAGCTGTTCCAAGACCAGATAAGGTTTCACCATGGGAAGTGGAACCTTTTCTGGCTCCCGTTACTTCATCTTCAGTTCAACCTCCCGTTGTGAAGACCAAGCGACCTCGGCCACCCAGTGAAATTCCAGATCTTGACACAACTTCCACTGCCTCTGCCTTCTGGAATTCTGAGCTGATGCAACCTGATATTAACCGACTCGGAGCTATGGCTGAAAGCAATAGGAGTGAAAATTCTGGCATGTGGCATCACAATCAAGCTGAAATGAATAGTAAAAGCAGCAGCAACACTCCTTCAAGAAATCAAACAGAAGGGAGTTGGCTGTCGTCTCCCCATTCAACCGGTCCTCCGCAACTGTTGCAGGACACAACAGATGATGGCAAGAGCGTCTCTGCTTGGCCTGTTCACTCAGTTCATTCAACCACTCACTTGTTGCGACAGAACAATGATCATCTGCTTGAACAAGCTGGCAAGGAGAATAAAGTTGAGATTGCTACAAGCTGTCGGTTGTTTGGGATTGATCTTATTGGTCATTCCCAAAATTCAACTGCGATGGAGAAGGCACCTACACATGCAGCTGGTATACTTAATGGCCCTTCTGAAAGTCATGTCAATGCCTTGTCTGGAACTGATTCAGACCATAAGTATAACATCTCAAGGGCTTCCCATGAGGGAAAACAAGAACAGCTGCAAGTAAAGGAGACTCAGAGCAAGCAAATATGTTCCAGAAGTCGCACCAAGGTTCAAATGCAGGGGGTCACAGTGGGTCGTGCTGTGGACTTGGCCATTTTGGATGGTTATGATCAACTTATAGACGAGTTGGAGGAGATGTTTGACATAAAAGGACAACTTAAAGATAGGAAGAAATGGGAAATTGTCTTCACTGATGACGAAGGGGATATGATGCTTGTGGGTGATGATCCATGGCCTGAATTCTGTAATATGGTCAGAAGAATCTTCATTTGTTCCAGCCAGGATGTGAAGAGGATGAGTGCGGGAAGCAAATTGCCTATTTCATCAATGGAAGGTGATGGGACTGTAATAAGTGGGAGCACAGCTGAAACCTGA 1992 0.4543 LEASTNQELNHRIPVFNLPSKILCRVVNVHLLAEQETDEVYAQILWCQNPCKDVAAFFLISKIFVVNLRFFLLQNEPTSPDPCPAEPPRPAVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGFSGELRVGVRRHARQQSSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIISVNKFLEAINNKFTVGMRFKMRFEGDESPETDKRFSGTIIGVEDISPHWVNSSWRSLKVQWDEPAAVPRPDKVSPWEVEPFLAPVTSSSVQPPVVKTKRPRPPSEIPDLDTTSTASAFWNSELMQPDINRLGAMAESNRSENSGMWHHNQAEMNSKSSSNTPSRNQTEGSWLSSPHSTGPPQLLQDTTDDGKSVSAWPVHSVHSTTHLLRQNNDHLLEQAGKENKVEIATSCRLFGIDLIGHSQNSTAMEKAPTHAAGILNGPSESHVNALSGTDSDHKYNISRASHEGKQEQLQVKETQSKQICSRSRTKVQMQGVTVGRAVDLAILDGYDQLIDELEEMFDIKGQLKDRKKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVKRMSAGSKLPISSMEGDGTVISGSTAET 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5334g00046 663 Gene3D - 256 329 - -
Pral5334g00046 663 SMART B3_2 95 197 IPR003340 GO:0003677
Pral5334g00046 663 FunFam Auxin response factor 256 329 - -
Pral5334g00046 663 SUPERFAMILY DNA-binding pseudobarrel domain 86 224 IPR015300 -
Pral5334g00046 663 Pfam Auxin response factor 221 302 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pral5334g00046 663 SUPERFAMILY CAD & PB1 domains 552 627 - -
Pral5334g00046 663 ProSiteProfiles PB1 domain profile. 551 632 IPR000270 GO:0005515
Pral5334g00046 663 FunFam Auxin response factor 546 639 - -
Pral5334g00046 663 FunFam Auxin response factor 93 197 - -
Pral5334g00046 663 Gene3D - 92 197 IPR015300 -
Pral5334g00046 663 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 4 639 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pral5334g00046 663 Pfam B3 DNA binding domain 95 196 IPR003340 GO:0003677
Pral5334g00046 663 Gene3D - 547 639 - -
Pral5334g00046 663 Pfam AUX/IAA family 529 587 IPR033389 -
Pral5334g00046 663 Pfam AUX/IAA family 594 635 IPR033389 -
Pral5334g00046 663 CDD B3_DNA 93 195 IPR003340 GO:0003677
Pral5334g00046 663 ProSiteProfiles B3 DNA-binding domain profile. 95 197 IPR003340 GO:0003677
Pral5334g00046 663 MobiDBLite consensus disorder prediction 394 440 - -
Pral5334g00046 663 MobiDBLite consensus disorder prediction 331 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5334g00046 Pral-Chr5334 283039 286562 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5334g00046 1 644 B3 DNA Binding Superfamily AT4G23980 56.221 0.0 637
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pral5334g00046 AUX_IAA 5.2e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5334g00046 K14486 - gmx:100803911 944.11