Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5334g00045 ATGGCTGTCCCTCAAACTCCAACCACATCTCCAAATCTGTATCCACAAGAACTTCAGTTAAAACTATATCAGGCCTTCATTTTCTCAATTCCAATCCTATTTTCCATCATTCTCTTTCTCTTGTTTTATTTGTTCTACCTCAAGCGCAGAGCTTCCTCTCTCTCTTCCCCTCCCCACTTTCTTCCCACCACTGCTCCTTCAACTACCTATCATTCCACCCCTTGTCGCTTGGATCTGACGCTTCAGTTCCTCGACACTCTTCCAAAAGTTTTATTTGATGAAGAATTAAAAGAAAAAGATTCACAATGTTGTGTGTGTCTGGGAGAATTTGAGATGAAAGAAGACGTATTACAGATCCCTCAGTGCAAGCATGTGTTTCACAGAGATTGCATTTACCATTGGCTCCATTCACACTCCACTTGCCCACTGTGCAGATGTTGTATCATTCCTCCCACCAAGTTTCTGAATCCACCACCCCTTCCTCCACCTCCTCCTCTTGCGGACGAAGCTGCTTCTGCTTCTGCTTCTGCTTCTTCCAACTAA 543 0.4401 MAVPQTPTTSPNLYPQELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSPPHFLPTTAPSTTYHSTPCRLDLTLQFLDTLPKVLFDEELKEKDSQCCVCLGEFEMKEDVLQIPQCKHVFHRDCIYHWLHSHSTCPLCRCCIIPPTKFLNPPPLPPPPPLADEAASASASASSN 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5334g00045 180 Pfam Ring finger domain 102 145 IPR001841 -
Pral5334g00045 180 MobiDBLite consensus disorder prediction 158 180 - -
Pral5334g00045 180 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 12 155 - -
Pral5334g00045 180 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Pral5334g00045 180 SMART ring_2 103 144 IPR001841 -
Pral5334g00045 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 150 IPR013083 -
Pral5334g00045 180 SUPERFAMILY RING/U-box 81 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5334g00045 Pral-Chr5334 277674 280237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5334g00045 8 150 C3H Transcription Factor Family AT4G10150 42.466 3.60e-35 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5334g00045 K19039 - gmx:100794298 222.631