Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5334g00029 ATGGATTCCGGCGTTGGTTTGTCTGTTGGCAAGTTTGAGAACGATGATGCTGATGTTGTGGAGAAAGATCCTACCGGACGTTACATTCGGTATGATGATATGTTGGGGAAAGGAGCATTCAAGACTGTATATAAGGCATTCGATGAAGTTGATGGGATAGAAGTTGCCTGGAACCAAGTGGATATTGAGGACGTTTTGCAGTCTCCACAACAATTGGAAAGGGTATATTCTGAGGTTCATCTCCTGAAGTCATTGAAACATGATAACATCATCAAGTTCTATAATTCCTGGGTGGATGATACGAACAAGACTATTAACATGATAACTGAGTTATTCATCTCTGGGAGTTTGAGACGATATCGAAGAATGCATAAGAATGTTGAACTGAAGGCCATGAAGAACTGGGCAAGGCAAATTCTTCAAGGTCTATGCTATTTGCATAGCCACGATCCTCCTATCATCCATAGAGATTTAAAATGTGATAATATCTTTATTAATGGTAATACTGGAGAAGTTAAGATTGGAGATCTTGGATTGGCAACTGTTCTACAGCAACCAACTGCACGGAGTGTCATTGGAACGCCAGAATTCATGGCCCCTGAGCTTTATGACGAAGAGTATAATGAACTTGTTGACATATATTCTTTTGGCATGTGCATGTTAGAAATGATTACCTGTGAGTACCCATATAGCGAATGCAAAAATCATGCACAGATATACAAGAAAGTTACCTCTGGAATAAAGCCTGCTGCCCTCGGTAAAGTGAATGATCCAGAAGTGAAACAATTTATAGAGAAATGTTTAGTTCCAGCCTCTATGAGATTGCCTGCATCTGAGCTATTGAAGGATCCATTTCTTGCTACTGACAACACAAAGGTGGTCGACCATGCACTGCAGCTGCCCAATCACATGACAGAATTGGTGACAACACCACCAACTGAGCCACGTCCCATGGAGATAGACCAGACTGTCAAGGATGTTTTACCTGGCTCCTGTCTGAAAGTTACTGAAGAAACTCCTCAAATATTAACTCTAGATTTCCTTACGAAGAATAAGAGTAATGAATTCAGGTTACGAGGGCAGAAAAATGCTTCGGACAGAACAGTTTCACTTAGTCTGCGCATTGCTGAGGCAAATGGTCGTGCGAGGAATATCCATTTTCCATTCTATCTTGATTCTGATACAGCAATTTCCATTGCCGAGGAGATGGTAGAAAATCTGGATCTCACTGGTGGGGACGTGAGTGTTATTGCTGAACTAATACACACCATGACTGTTAGGCTTGTTCCTAACTGGAGAGTGTCTCGTCAACAATTATGTTCTGGAGCAGATTGTTTGGATGGCCATTCTCACCTAGTTTTAAAGAGGGGATCATCTTTAAGGTGCCATAGTTACGAGGATCATGTTAACTCACAGGTTCTTGATGAAGATCAAGAGAAACAGGAATCACTTATGTCAGGCATTTCAGCTGAGGATGAGATTCCAGTCGTCTCAGATGCTAAAAACTTACAACCTAATTGTACTTTCTTTGATGGATTCTATGAGGGCTCCACTACCAAAAGGTCCAATTCAGATGTCAGGTTATGTGATCAAGATGAACGCAATAGGGGAGCTCATGGTGATGGATTTGTCAGCATCGGTGGGTCTGATGGGAACTCAGTTAACGTTTCAGAGAACTCAACTGTCTCATCTATCGATTCGTGTGGCGATGAACCCAAAAACTTCGACATGTCAAGCATCAATTCTCTTTCTCTCGCAGACAAAGATCAGTGTGACGAGCTGCAACAGGAGCTTGATACAATAAATACACAGTACTGCCAATGCTTTCTTGAACTTGCGAAGACGAGGGAGGATGCAATAGAAAACGCAAAAAGGATGGATTACTAGGAAGAAAATACTTGTAATGTGATGGGCTAG 1917 0.4168 MDSGVGLSVGKFENDDADVVEKDPTGRYIRYDDMLGKGAFKTVYKAFDEVDGIEVAWNQVDIEDVLQSPQQLERVYSEVHLLKSLKHDNIIKFYNSWVDDTNKTINMITELFISGSLRRYRRMHKNVELKAMKNWARQILQGLCYLHSHDPPIIHRDLKCDNIFINGNTGEVKIGDLGLATVLQQPTARSVIGTPEFMAPELYDEEYNELVDIYSFGMCMLEMITCEYPYSECKNHAQIYKKVTSGIKPAALGKVNDPEVKQFIEKCLVPASMRLPASELLKDPFLATDNTKVVDHALQLPNHMTELVTTPPTEPRPMEIDQTVKDVLPGSCLKVTEETPQILTLDFLTKNKSNEFRLRGQKNASDRTVSLSLRIAEANGRARNIHFPFYLDSDTAISIAEEMVENLDLTGGDVSVIAELIHTMTVRLVPNWRVSRQQLCSGADCLDGHSHLVLKRGSSLRCHSYEDHVNSQVLDEDQEKQESLMSGISAEDEIPVVSDAKNLQPNCTFFDGFYEGSTTKRSNSDVRLCDQDERNRGAHGDGFVSIGGSDGNSVNVSENSTVSSIDSCGDEPKNFDMSSINSLSLADKDQCDELQQELDTINTQYCQCFLELAKTREDAIENAKRRXDYXEENTCNVMG 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5334g00029 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 153 165 IPR008271 GO:0004672|GO:0006468
Pral5334g00029 639 Gene3D - 367 450 - -
Pral5334g00029 639 FunFam Probable serine/threonine-protein kinase WNK1 14 110 - -
Pral5334g00029 639 CDD STKc_WNK 27 286 - -
Pral5334g00029 639 Gene3D Phosphorylase Kinase; domain 1 13 110 - -
Pral5334g00029 639 SUPERFAMILY Protein kinase-like (PK-like) 31 323 IPR011009 -
Pral5334g00029 639 Pfam Protein kinase domain 33 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5334g00029 639 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 370 423 IPR024678 GO:0004674|GO:0005524
Pral5334g00029 639 Coils Coil 628 629 - -
Pral5334g00029 639 Coils Coil 613 626 - -
Pral5334g00029 639 SMART serkin_6 29 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5334g00029 639 ProSiteProfiles Protein kinase domain profile. 29 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5334g00029 639 Gene3D Transferase(Phosphotransferase) domain 1 113 294 - -
Pral5334g00029 639 Coils Coil 631 633 - -
Pral5334g00029 639 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 15 616 - -
Pral5334g00029 639 FunFam probable serine/threonine-protein kinase WNK9 112 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5334g00029 Pral-Chr5334 141100 144426 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5334g00029 1 637 MAP Kinase Kinase Kinase AT5G41990 50.702 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Pral5334g00029 Pkinase 8.4e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5334g00029 K08867 - qsa:O6P43_024088 754.207