Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5333g00050 ATGGAGAATTCGCTGCCGAATGGAATGTTTCCTCGGGCTCCGAATTCCAGATTCTCGGCTAGGGAGGGAAGAAGTGGGTATGAACCATCAGATACAGAGACAGAGTGGCAAGAAGTTCCCCGACATGAACGAGAAAGAAAGAATCTGACTCTGGGACCTGAAGAACCAAAAGTCCTCAACTTCAGGAATAAAAGTCCCATGGCACTATACAGAAGGCATCCTTCCAAGTTTGAACTCGAAATCTCATCTCCTGTTGCGTCTTCAGTAGCAAGCTCAGGACGAAGGAGACACCAAAGTAGATCGCCGTATAGGCCCTTCAGGGCCGACGGTGAGGCTCCATTTCCCAAAACTAGTTTGGATGTTGGGAGAAGTGTCAGTCCTTTGCCAAAACCTGACCTTGGAAGGCATGGATCTCCATATCAATATGAAAGAGAAAATCTCAATCGGCGAGCGGTGAACAGAGTAAGTGAGAAATCAAACCAGAGAAGATCAAAGACTGCTCCGAGGGTAAGGGGAAGAGAAAGGGAAGCATCCCATGGGAGCAATCCTTCAATAGGAGAGATCAACGAGATGGTTGCTGAGGCGAACTTTTCAAGAGATCCTGTTAATAACGAGCTCATAATAACAAGCGCAGAGTCGAGCCTACCGGGTGATATTTTCTTTTCTCGCGAATGCAATGCCATGATGAAGAGCAAGAACATGTTAACAAAACCAAACATTGATGATGAAACCCAGTTTGATAGCTCGAGACCTAAGATTCTCCCCCAACGAGACACCCCTTATCATCGTCGTCATCATTATCATTCAAACAGAGCAAATAGGAATCTCAACACTGTGAACATACGAGGCACATCATCTAGTACTACTGTGCTGTCTCGCTCGAGTACGATTACTAGTACTGCTGCTAAAAGCAAAAAGAACAGTGGGAATTTAAGCACTAGCAGTAGTGTGAAGAGTGATGTTAGTTGGACGAGTGCGAGTATTCAGAAATTCATAATGAACAGGAGGAAGAACCAAGCAGACGGATGGTTTGCTTGCATGAGAAAAGTAGGCAGGCCATCGAATAAATCGCCAGAACATCGATCAGTTGATGAGGCTTCTATCATTGAGAAAGCTTTCGTGCTCCAAAGCCTCCCACAATTCTGGGCAGATAAGCACCAACCCACCTCCATGGATGGCTTCATTTGCCACCAACAAGAAGCTCAGCTTCTCAAGGAACTAGCGTCTCAAGACGTGTGTCCTCATATTTTGCTAAAAGGACCAATTGGCTCAGGAAAAAGAGCGCTGGCAATGGCTCTTCTGCGAGAAATATTCGGTGATGCGGTGTCCAATGATAGAAGGCCCGTGAAAATCACTGTTCCAATAACGTCCAGTCCTCATCACATGGAGCTCAATGTAAATTCGGAACCTAATGCTAAATATGCTTTAATGGGATTAGTTAAGGAAATAAGCACTGAACATGCGATTACCCCTGAAGTCAGTAATTTCAATTTCAAGTCAGATTACAAAGTATTAGTTCTCTACGAGGTTGACAAAGCAGCTGACAACATCCAACACATGATCAAATGGATTATAGATCGCTATTCTGACATATGCAAGCTCATAGTTTGTTGCGAAGATGGTGGGGACATAATCGACCCTGTGAAAAACCGGTTCGAAGTTATCAATATTGATGCCCCACCAACGCATGAAATTATGGATGTTCTTATTCAGATAGCAAAACAAGAAGAAATTGATCTGTCCATGAATTTTGCTGCTAAGATTGCCACCAAGTCAAAGCAGAATCTCAGGAAAGCAATCATGGCTCTTGAAGCATGCAGAGCACACAACTATCCATTTTCAGAAGAACAACCAATTCCGCTTGGATGGGAGGAGACTATAATAGAAGTTTCTGCAGAGATCCTAGCTGATCCTTCACATTCACGCTTATTCTCAGTCAGAGAGAAATTACAGAAGCTCCTGGTGGATTTTGTTCACCCCAAGCTGATTCTCCGGAAACTGGTGGAACAGCTCCTCAAAGGAATTGAGAGCAACTTAAAAAGGGAGCTCTTCTACTGGCATGCTTATTATGGGAATGATATTGAAGGTTCAATGCGAAAAGAGAGAAATTGCAGGCCCCAAGATTCTGAGGTTTTCCTGTTACACAAATTACCGAGCTCTTCTGGTTGA 2169 0.4403 MENSLPNGMFPRAPNSRFSAREGRSGYEPSDTETEWQEVPRHERERKNLTLGPEEPKVLNFRNKSPMALYRRHPSKFELEISSPVASSVASSGRRRHQSRSPYRPFRADGEAPFPKTSLDVGRSVSPLPKPDLGRHGSPYQYERENLNRRAVNRVSEKSNQRRSKTAPRVRGREREASHGSNPSIGEINEMVAEANFSRDPVNNELIITSAESSLPGDIFFSRECNAMMKSKNMLTKPNIDDETQFDSSRPKILPQRDTPYHRRHHYHSNRANRNLNTVNIRGTSSSTTVLSRSSTITSTAAKSKKNSGNLSTSSSVKSDVSWTSASIQKFIMNRRKNQADGWFACMRKVGRPSNKSPEHRSVDEASIIEKAFVLQSLPQFWADKHQPTSMDGFICHQQEAQLLKELASQDVCPHILLKGPIGSGKRALAMALLREIFGDAVSNDRRPVKITVPITSSPHHMELNVNSEPNAKYALMGLVKEISTEHAITPEVSNFNFKSDYKVLVLYEVDKAADNIQHMIKWIIDRYSDICKLIVCCEDGGDIIDPVKNRFEVINIDAPPTHEIMDVLIQIAKQEEIDLSMNFAAKIATKSKQNLRKAIMALEACRAHNYPFSEEQPIPLGWEETIIEVSAEILADPSHSRLFSVREKLQKLLVDFVHPKLILRKLVEQLLKGIESNLKRELFYWHAYYGNDIEGSMRKERNCRPQDSEVFLLHKLPSSSG 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5333g00050 722 FunFam replication factor C subunit 3 561 619 - -
Pral5333g00050 722 SUPERFAMILY post-AAA+ oligomerization domain-like 621 693 IPR008921 GO:0003677|GO:0006260
Pral5333g00050 722 MobiDBLite consensus disorder prediction 137 180 - -
Pral5333g00050 722 MobiDBLite consensus disorder prediction 238 257 - -
Pral5333g00050 722 MobiDBLite consensus disorder prediction 24 52 - -
Pral5333g00050 722 MobiDBLite consensus disorder prediction 81 185 - -
Pral5333g00050 722 Gene3D - 562 619 - -
Pral5333g00050 722 Gene3D - 622 701 - -
Pral5333g00050 722 MobiDBLite consensus disorder prediction 81 96 - -
Pral5333g00050 722 MobiDBLite consensus disorder prediction 283 316 - -
Pral5333g00050 722 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 375 608 IPR027417 -
Pral5333g00050 722 Gene3D - 380 560 IPR027417 -
Pral5333g00050 722 MobiDBLite consensus disorder prediction 1 60 - -
Pral5333g00050 722 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 379 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5333g00050 Pral-Chr5333 274379 278116 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5333g00050 381 690 Core DNA Replication Machinery Family AT5G27740 38.580 7.37e-73 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5333g00050 K10756 - gmx:100795321 747.658