Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5333g00032 ATGGAGTATAGGGATCTCCACTTCCAGCATCAGCTCCAAGAAGAATATGCTCGCTACTATAAGCCTTCCTTTACTTATGATGAAGAAGCATGGAACTCGAGCAATTTGTGCAATAGTTATGGCAGTACGTTTACTGAAAGCAGTCAAAGCACTGAAATAAATTTAAGAGATAAAGAGAAGAGAGAATATGATTTGGATCCTCAACGTTCATCAGGTGATGATATGCTTACGAAAGACGAGGTTTCTGATCATTATTTACCCAGACTGAGTGAAAGGATTAGCAGCCGCCTGTCTGGTTCTTCTGTGGATGACTCGCTAGTCTCATCAACCAGTGAACATTATCTTCATCATGTGACCGGGAAAGAGACTTGGCCCGCGGGGATATCCCTGACCAATAAGACGACGTCGTACAACACCTTGGGTGCTGCATCTTCATCGTCCAGCTCCGATTTATCAACCCTAGAGATGCCTCCTTCTTTATTACTGTCATGCTCTCTTGGCTTAGGTTCACAAATGTTGCTGGGCGGGAGTTCTTGCGGTGGCCTTCATCTTTCCTACGATTCTTTTGGTCTTGATGACATGCAACAGCCAGAAAATAGTCCATCGGACAGCTCAAATAAAATTTCAGGATTCATAAGTGGAAGTGGAGTTGAACAGGCAAGAACCATTCGCGGTTGGCCTGAACAGAAGGAATATGAAGGCAGAGCAAAGAAGTCAAGATCTTCATGCCCTGCTCTGAAGGTCAGAAAGGAAAAGCTGGGAGACAGGATTCAGACCCTTCAGAGGTTCGTGGCACCTTTTGGGAAGACCAATACTGCCTCCGTGTTGAATGAAACTATAGGCTACATCCACTTCCTTCATGACCAAATTCAGACTTTAAGCATCCCTTATATGAAACCGTGGAAAACCAAGCCCTTCGGAACGGTGCAGTTGGATTCTAGAGAAGAAAATGGCAGAGAATCGAAGCCAGACCTTAGAAGCAAAGGCCTCTGCCTTGTGCCCCTTTCTTGCGCTTCATATATTCATAATTTGGACTAG 1038 0.448 MEYRDLHFQHQLQEEYARYYKPSFTYDEEAWNSSNLCNSYGSTFTESSQSTEINLRDKEKREYDLDPQRSSGDDMLTKDEVSDHYLPRLSERISSRLSGSSVDDSLVSSTSEHYLHHVTGKETWPAGISLTNKTTSYNTLGAASSSSSSDLSTLEMPPSLLLSCSLGLGSQMLLGGSSCGGLHLSYDSFGLDDMQQPENSPSDSSNKISGFISGSGVEQARTIRGWPEQKEYEGRAKKSRSSCPALKVRKEKLGDRIQTLQRFVAPFGKTNTASVLNETIGYIHFLHDQIQTLSIPYMKPWKTKPFGTVQLDSREENGRESKPDLRSKGLCLVPLSCASYIHNLD 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5333g00032 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 237 286 IPR011598 GO:0046983
Pral5333g00032 345 Gene3D - 245 299 IPR036638 GO:0046983
Pral5333g00032 345 CDD bHLH_AtbHLH_like 244 294 IPR045239 -
Pral5333g00032 345 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 114 339 - -
Pral5333g00032 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 247 298 IPR036638 GO:0046983
Pral5333g00032 345 MobiDBLite consensus disorder prediction 193 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5333g00032 Pral-Chr5333 182246 185109 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5333g00032 238 340 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 62.500 2.21e-36 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5333g00032 - - pcin:129322669 291.197