Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5333g00031 ATGGAGTATAGGGATCTCCACTTCCAGCATCAGCTCCAAGAAGAATATGCTCGCTACTATAAGCCTTCCTTTACTTATGATGAAGAAGCATGGAACTCGAGCAATTTGTGCAATAGTTATGGCAGTACGTTTACTGAAAGCAGTCAAAGCACTGAAATAAATTTAAGAGATAAAGAGAAGAGAGAATATGATTTGGATCCTCAACGTTCATCAGGTGATGATATGCTTACGAAAGACGAGGTTTCTGATCATTATTTACCCAGACTGAGTGAAAGGATTAGCAGCCGCCTGTCTGGTTCTTCTGTGGATGACTCGCTAGTCTCATCAACCAGTGAACATTATCTTCATCATGTGACCGGGAAAGAGACTTGGCCCGCGGGGATATCCCTGACCAATAAGACGACGTCGTACAACACCTTGGGTGCTGCATCTTCATCGTCCAGCTCCGATTTATCAACCCTAGAGATGCCTCCTTCTTTATTACTGTCATGCTCTCTTGGCTTAGGTTCACAAATGTTGCTGGGCGGGAGTTCTTGCGGTGGCCTTCATCTTTCCTACGATTCTTTTGGTCTTGATGACATGCAACAGCCAGAAAATAGTCCATCGGACAGCTCAAATAAAATTTCAGGATTCATAAGTGGAAGTGGAGTTGAACAGGCAAGAACCATTCGCGGTTGGCCTGAACAGAAGGAATATGAAGGCAGAGCAAAGAAGTCAAGATCTTCATGCCCTGCTCTGAAGGTCAGAAAGGAAAAGCTGGGAGACAGGATTCAGACCCTTCAGAGGTTCGTGGCACCTTTTGGGAAGGTACGCCGTCCGTATGTCTTCACTGGACGGACCAATACTGCCTCCGTGTTGAATGAAACTATAGGCTACATCCACTTCCTTCATGACCAAATTCAGACTTTAAGCATCCCTTATATGAAACCGTGGAAAACCAAGCCCTTCGGAACGGTGCAGTTGGATTCTAGAGAAGAAAATGGCAGAGAATCGAAGCCAGACCTTAGAAGCAAAGGCCTCTGCCTTGTGCCCCTTTCTTGCGCTTCATATATTCATAATTTGGACTAG 1068 0.4522 MEYRDLHFQHQLQEEYARYYKPSFTYDEEAWNSSNLCNSYGSTFTESSQSTEINLRDKEKREYDLDPQRSSGDDMLTKDEVSDHYLPRLSERISSRLSGSSVDDSLVSSTSEHYLHHVTGKETWPAGISLTNKTTSYNTLGAASSSSSSDLSTLEMPPSLLLSCSLGLGSQMLLGGSSCGGLHLSYDSFGLDDMQQPENSPSDSSNKISGFISGSGVEQARTIRGWPEQKEYEGRAKKSRSSCPALKVRKEKLGDRIQTLQRFVAPFGKVRRPYVFTGRTNTASVLNETIGYIHFLHDQIQTLSIPYMKPWKTKPFGTVQLDSREENGRESKPDLRSKGLCLVPLSCASYIHNLD 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5333g00031 355 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 247 308 IPR036638 GO:0046983
Pral5333g00031 355 MobiDBLite consensus disorder prediction 224 243 - -
Pral5333g00031 355 MobiDBLite consensus disorder prediction 193 243 - -
Pral5333g00031 355 MobiDBLite consensus disorder prediction 193 216 - -
Pral5333g00031 355 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 237 296 IPR011598 GO:0046983
Pral5333g00031 355 CDD bHLH_AtbHLH_like 244 304 IPR045239 -
Pral5333g00031 355 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 113 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5333g00031 Pral-Chr5333 182246 185109 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5333g00031 238 350 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 57.018 3.00e-33 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5333g00031 - - pcin:129322669 283.108