Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5333g00024 ATGGCGGGTTTGTTCTCACTAGGCGGCGGAGGAGGTAGGGGAGGAGGGAGCAACCAGGACGACGAACCCCACCACAATAACCCACCCACTGGAGTTCCTCATCCAGACGCCTTATTTTGGTACAAGAATAATGAAGACGTATCTTGTTACAGAGGCTTCGAGCTGTGGAACCAGCAGCACCAGCCGGTCATGCCTCCTCAGGCGAGGCCGCTTCTCCACCAAGATCTTTACTCCTTAGGGGTGGGGCCGAGCAGCAGGAGCTCCGATGATCAGTCTTCGTCGAGATCGGGCGTCATGATGATGCGTTCCGCCGGCGGGAGCAGCGGCGGAGGAATAAGCTGCCAAGACTGTGGGAACCAGGCGAAGAAGGACTGCCCACACATGCGGTGCAGGACTTGCTGCAAGAGCCGTGGCTACGACTGCCAGACGCATCTGAAGAGCACTTGGGTTCCGGCGGCCAAGCGACGCGAGCGACACCAGCAGCAGCAGCAGCAACTTCAGCTTCGAGGAGACAACAATCCCAAGAGGCTGAGAGATACTTCTAATAATAACCCCAGCACCTCAACTCATGTGCAAATACCCACTCACTCTTCATCAGCAGAAGGGTTAGAGCATGGGAATTTTCCAGCAGTGGTGAGTTCCTCAGCGGAGTTCCGGTGCGTGCGGGTTAGCCCCATGGACGAGGCTGACGAGCAATACGCGTACCAAACGGCTGTGAACATCGGAGGCCACGTATTCAGAGGAATTCTCTACGACCATGGCCCCGATCCCAATTACATGTCCACCGCTGATACCTCTCCCGGTGGAGCCGTTCAGCCTCTCAACCTCATTGCCGCCACCGGTGTTTCTGCTCTTCCCGCTGCCACAACAAGCGGTGGTGCCGCCGCCGGGGGTTCCTCCGCTGGTCCGCTCCTCGATCCTTCCTTGTATGCGGCCTCGCTTGGCACTTTCATGTCTGGCAGCGGTACGCAGTTCTTTCCTCACCCAAGATCTTGA 996 0.5773 MAGLFSLGGGGGRGGGSNQDDEPHHNNPPTGVPHPDALFWYKNNEDVSCYRGFELWNQQHQPVMPPQARPLLHQDLYSLGVGPSSRSSDDQSSSRSGVMMMRSAGGSSGGGISCQDCGNQAKKDCPHMRCRTCCKSRGYDCQTHLKSTWVPAAKRRERHQQQQQQLQLRGDNNPKRLRDTSNNNPSTSTHVQIPTHSSSAEGLEHGNFPAVVSSSAEFRCVRVSPMDEADEQYAYQTAVNIGGHVFRGILYDHGPDPNYMSTADTSPGGAVQPLNLIAATGVSALPAATTSGGAAAGGSSAGPLLDPSLYAASLGTFMSGSGTQFFPHPRS 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5333g00024 331 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 314 IPR007818 GO:0003700|GO:0006355
Pral5333g00024 331 MobiDBLite consensus disorder prediction 1 37 - -
Pral5333g00024 331 MobiDBLite consensus disorder prediction 79 111 - -
Pral5333g00024 331 Pfam Domain of unknown function (DUF702) 111 256 - -
Pral5333g00024 331 MobiDBLite consensus disorder prediction 163 202 - -
Pral5333g00024 331 MobiDBLite consensus disorder prediction 152 205 - -
Pral5333g00024 331 NCBIfam LRP1 C-terminal domain 208 255 IPR006511 -
Pral5333g00024 331 MobiDBLite consensus disorder prediction 80 101 - -
Pral5333g00024 331 NCBIfam putative zinc finger domain, LRP1 type 113 155 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5333g00024 Pral-Chr5333 135643 138370 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5333g00024 1 331 C2H2 Transcription Factor Family AT3G51060 46.457 7.99e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Pral5333g00024 DUF702 7.6e-63 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5333g00024 - - qsa:O6P43_024815 341.273