Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5333g00023 ATGGCGGGTTTGTTCTCACTAGGCGGCGGAGGAGGTAGGGGAGGAGGGAGCAACCAGGACGACGAACCCCACCACAATAACCCACCCACTGGAGTTCCTCATCCAGACGCCTTATTTTGGTACAAGAATAATGAAGACGTATCTTGTTACAGAGGCTTCGAGCTGTGGAACCAGCAGCACCAGCCGGTCATGCCTCCTCAGGCGAGGCCGCTTCTCCACCAAGATCTTTACTCCTTAGGGGTGGGGCCGAGCAGCAGGAGCTCCGATGATCAGTCTTCGTCGAGATCGGGCGTCATGATGATGCGTTCCGCCGGCGGGAGCAGCGGCGGAGGAATAAGCTGCCAAGACTGTGGGAACCAGGCGAAGAAGGACTGCCCACACATGCGGTGCAGGACTTGCTGCAAGAGCCGTGGCTACGACTGCCAGACGCATCTGAAGAGCACTTGGGTTCCGGCGGCCAAGCGACGCGAGCGACACCAGCAGCAGCAGCAGCAACTTCAGCTTCGAGGAGACAACAATCCCAAGAGGCTGAGAGATACTTCTAATAATAACCCCAGCACCTCAACTCATGTGCAAATACCCACTCACTCTTCATCAGCAGGGTTAGAGCATGGGAATTTTCCAGCAGTGGTGAGTTCCTCAGCGGAGTTCCGGTGCGTGCGGGTTAGCCCCATGGACGAGGCTGACGAGCAATACGCGTACCAAACGGCTGTGAACATCGGAGGCCACGTATTCAGAGGAATTCTCTACGACCATGGCCCCGATCCCAATTACATGTCCACCGCTGATACCTCTCCCGGTGGAGCCGTTCAGCCTCTCAACCTCATTGCCGCCACCGGTGTTTCTGCTCTTCCCGCTGCCACAACAAGCGGTGGTGCCGCCGCCGGGGGTTCCTCCGCTGGTCCGCTCCTCGATCCTTCCTTGTATGCGGCCTCGCTTGGCACTTTCATGTCTGGCAGCGGTACGCAGTTCTTTCCTCACCCAAGATCTTGA 993 0.578 MAGLFSLGGGGGRGGGSNQDDEPHHNNPPTGVPHPDALFWYKNNEDVSCYRGFELWNQQHQPVMPPQARPLLHQDLYSLGVGPSSRSSDDQSSSRSGVMMMRSAGGSSGGGISCQDCGNQAKKDCPHMRCRTCCKSRGYDCQTHLKSTWVPAAKRRERHQQQQQQLQLRGDNNPKRLRDTSNNNPSTSTHVQIPTHSSSAGLEHGNFPAVVSSSAEFRCVRVSPMDEADEQYAYQTAVNIGGHVFRGILYDHGPDPNYMSTADTSPGGAVQPLNLIAATGVSALPAATTSGGAAAGGSSAGPLLDPSLYAASLGTFMSGSGTQFFPHPRS 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5333g00023 330 MobiDBLite consensus disorder prediction 1 37 - -
Pral5333g00023 330 MobiDBLite consensus disorder prediction 79 111 - -
Pral5333g00023 330 NCBIfam LRP1 C-terminal domain 207 254 IPR006511 -
Pral5333g00023 330 MobiDBLite consensus disorder prediction 163 202 - -
Pral5333g00023 330 MobiDBLite consensus disorder prediction 152 205 - -
Pral5333g00023 330 MobiDBLite consensus disorder prediction 80 101 - -
Pral5333g00023 330 Pfam Domain of unknown function (DUF702) 111 255 - -
Pral5333g00023 330 NCBIfam putative zinc finger domain, LRP1 type 113 155 IPR006510 -
Pral5333g00023 330 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 313 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5333g00023 Pral-Chr5333 135643 138370 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5333g00023 1 330 C2H2 Transcription Factor Family AT3G51060 46.579 6.03e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Pral5333g00023 DUF702 8.6e-63 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5333g00023 - - qsa:O6P43_024815 341.658