Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5333g00008 ATGGGAAGAGGAAAGATTGAGATCAAGTTGATCGAGAACCCCACCAACAGGCAGGTCACCTACTCCAAGCGACGTAATGGCATCTTCAAGAAAGCTCATGAGCTCAGTGTTCTCTGTGATGCTAAGGTCTCCCTCATCATCTTCTCTAAAAACAACAAGATGCACGAATACGTCACCCCTGGCCTTACAACGAAGAGGATGATTGATCAATACCAGGAGGCGTTGGGGAATGTTGATTTGTGGTGTTCCCACTACGAGAGAATGCTGGAAAAGTTGAGGAAACTGAAAGAGATTAACAATAAGCTCAGAGGAGAGATCAGCTATGGTTTTGAAAGGAATAGGTTGGGCGCAGATTTGGACAATCTGAACTTCCAGCAACTACAGAGTCTGGAGGAGGAGTTAATTTCTTCCTCGGCAATGATACGTGAAAGGAAGATCTCTAACGATCGTGGTGCTAATCTGCTTCATGTGATCAAAACTCGGACCGAGACCTGCAAGAAAAAGGTAAAAAACTTGGAGCAGGTGAACAGGAGTTTAATGCTTGGAATTGAGGACAAGTATATGGTGCATCCACATTACCTGATGATGTAG 591 0.445 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIIFSKNNKMHEYVTPGLTTKRMIDQYQEALGNVDLWCSHYERMLEKLRKLKEINNKLRGEISYGFERNRLGADLDNLNFQQLQSLEEELISSSAMIRERKISNDRGANLLHVIKTRTETCKKKVKNLEQVNRSLMLGIEDKYMVHPHYLMM 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5333g00008 196 Coils Coil 85 105 - -
Pral5333g00008 196 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral5333g00008 196 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral5333g00008 196 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral5333g00008 196 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 155 - -
Pral5333g00008 196 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Pral5333g00008 196 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Pral5333g00008 196 Pfam K-box region 84 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral5333g00008 196 ProSiteProfiles K-box domain profile. 85 189 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral5333g00008 196 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral5333g00008 196 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Pral5333g00008 196 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pral5333g00008 196 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Pral5333g00008 196 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5333g00008 Pral-Chr5333 46228 48208 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5333g00008 1 193 MADS-box Gene Family AT3G54340 48.705 5.78e-56 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral5333g00008 K-box 1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5333g00008 K09264 - gmx:100784496 251.136