Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5333g00006 ATGGGAAGAGGAAAGATTGAGATCAAGTTGATCGAGAACCCCACCAACAGGCAGGTCACCTACTCCAAGCGACGTAATGGCATCTTCAAGAAAGCTCATGAGCTCAGTGTTCTCTGTGATGCTAAGGTCTCCCTCATCATCTTCTCTAAAAACAACAAGATGCACGAATACGTCACCCCTGGCCTTACAACGAAGAGGATGATTGATCAATACCAGGAGGCGTTGGGGAATGTTGATTTGTGGTGTTCCCACTACGAGAGAATGCTGGAAAAGTTGAGGAAACTGAAAGAGATTAACAATAAGCTCAGAGGAGAGATCAGCTATGGTTTTGAAAGGAATAGGTTGGGCGCAGATTTGGACAATCTGAACTTCCAGCAACTACAGAGTCTGGAGGAGGAGTTAATTTCTTCCTCGGCAATGATACGTGAAAGGAAGCTTCATGTGATCAAAACTCGGACCGAGACCTGCAAGAAAAAGGAGGACAAGTATATGGTGCATCCACATTACCTGATGATGTAG 519 0.4509 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIIFSKNNKMHEYVTPGLTTKRMIDQYQEALGNVDLWCSHYERMLEKLRKLKEINNKLRGEISYGFERNRLGADLDNLNFQQLQSLEEELISSSAMIRERKLHVIKTRTETCKKKEDKYMVHPHYLMM 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5333g00006 172 Coils Coil 85 105 - -
Pral5333g00006 172 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Pral5333g00006 172 ProSiteProfiles K-box domain profile. 85 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral5333g00006 172 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Pral5333g00006 172 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral5333g00006 172 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Pral5333g00006 172 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pral5333g00006 172 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Pral5333g00006 172 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral5333g00006 172 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral5333g00006 172 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral5333g00006 172 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 150 - -
Pral5333g00006 172 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral5333g00006 172 Pfam K-box region 84 162 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5333g00006 Pral-Chr5333 46228 48208 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5333g00006 1 172 MADS-box Gene Family AT3G54340 50.000 1.77e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral5333g00006 K-box 3.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5333g00006 K09264 - gmx:100784496 234.958