Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5333g00003 ATGGGGGGAAGAGAGAGGGAAGGGGGAAAAGTAAAAATGAAAAAGCGAAAGAGAAAGAAACGGGCACTTTGTAGTAATTGGAGCATGGACGCTTTCAGCCCTCATTCAATGCTTTACCAAACTCACCATCATCTTCTCCTTCACTTCCTCCCCTTTCCTCCTTCCATTTCTCACCTCCCAACTCCCTCTCCTCTTTACCGTCTCTCTCTCCCTCAGGCCGAAACCCAAATGGAGTGCGTAGAAGCGGCGTTGAAGACCAGTTTTCCCAGAGGCGCGGCCGTCAAACTTGACCCCCTGTCTCCTGTAGATGACTCCTCCGCCTCCTGTGTCCCAAATGCCGCCCCTTCCGACGACTTCTCCATAGATGAACTGCTCGACTTTTCACACTTGGAAGAGCCATTCGAAGATGAACAACATCAGAAGCCTGACTCTGCCTCTGTTTCCCCTCCACCGTTGGACCCAAGTCGTGAAATTTCTCACTTTACCTTCCCTTCTTCTGTCAAAGACGATGTTGACTCCTTGCCGTCTGGTGAACTCAGCGTTCCGGCCGATGATTTGGCAAACTTAGAGTGGTTGTCTCACTTTGTCGAAGATTCCTTCTCGGTAGGTTCCGCCGCGTATCCCGCCGGTACTCTAATGGGAAAAGCCAAGAGCCATGCCGAGCCGAGGCCCGAGCCGGACAGCCGTCTTTCGACTCATCCCTGTTTTAAAACTCCGGTCCCGGCTAAGGCCAGAAGCAAGAGAACGCGAACCGGCGTTCGGGTCTGGCCTTTCAGGTCTCCATCATTAACCGAATCATCCTCAAGCTCCACATCATCTTCCTCCTCCTCGTCCCCCACGAGCCCCTGGTTAATTTCCGCCAGCGCAGCGCCCGAGCAAGTTTGCTTTGAGGCCAAGCCGCCTTCGAAGAGACCGTTGAAAAAGCCGGCCCCAGAGGCTGCTGCAGGGACCGGCGGAACAGCGCAGACGGCACGGCGGTGCACCCACTGCGGGGTCCACAGGACGCCGCAGTGGCGAGCCGGCCCGCTGGGAGCCAAAACACTGTGCAATGCGTGCGGGGTCCGATACAAGTCGGGACGGCTTTTACCGGAATACAGGCCAGCATGCAGCCCGACGTTCTCGAGCGAACTGCACTCGAACCACCACCGGAAAGTGCTGGAGATGCGGCGGAAGAAGGAGGGAATGGGCGGAGGCGAGTCCGGTCTGGGTCCGGCCACGACTCCGGCGGTTCCGAGTTTTGGATAA 1245 0.5663 MGGREREGGKVKMKKRKRKKRALCSNWSMDAFSPHSMLYQTHHHLLLHFLPFPPSISHLPTPSPLYRLSLPQAETQMECVEAALKTSFPRGAAVKLDPLSPVDDSSASCVPNAAPSDDFSIDELLDFSHLEEPFEDEQHQKPDSASVSPPPLDPSREISHFTFPSSVKDDVDSLPSGELSVPADDLANLEWLSHFVEDSFSVGSAAYPAGTLMGKAKSHAEPRPEPDSRLSTHPCFKTPVPAKARSKRTRTGVRVWPFRSPSLTESSSSSTSSSSSSSPTSPWLISASAAPEQVCFEAKPPSKRPLKKPAPEAAAGTGGTAQTARRCTHCGVHRTPQWRAGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEGMGGGESGLGPATTPAVPSFG 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5333g00003 414 MobiDBLite consensus disorder prediction 134 160 - -
Pral5333g00003 414 ProSiteProfiles GATA-type zinc finger domain profile. 321 357 IPR000679 GO:0006355|GO:0043565
Pral5333g00003 414 CDD ZnF_GATA 326 374 IPR000679 GO:0006355|GO:0043565
Pral5333g00003 414 MobiDBLite consensus disorder prediction 260 283 - -
Pral5333g00003 414 Pfam GATA zinc finger 327 361 IPR000679 GO:0006355|GO:0043565
Pral5333g00003 414 PANTHER GATA TRANSCRIPTION FACTOR 113 394 - -
Pral5333g00003 414 MobiDBLite consensus disorder prediction 299 322 - -
Pral5333g00003 414 SMART GATA_3 321 375 IPR000679 GO:0006355|GO:0043565
Pral5333g00003 414 FunFam GATA transcription factor 319 400 - -
Pral5333g00003 414 MobiDBLite consensus disorder prediction 393 414 - -
Pral5333g00003 414 MobiDBLite consensus disorder prediction 214 283 - -
Pral5333g00003 414 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 324 384 - -
Pral5333g00003 414 Gene3D - 318 394 IPR013088 GO:0006355|GO:0008270
Pral5333g00003 414 ProSitePatterns GATA-type zinc finger domain. 327 352 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5333g00003 Pral-Chr5333 34521 36165 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5333g00003 81 413 C2C2-Gata Transcription Factor Family AT5G66320 50.872 4.16e-81 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pral5333g00003 GATA 2.9e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5333g00003 - - qsa:O6P43_033646 333.183