Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5333g00001 ATGAAACTCAAGGTTGATGTGAAGGTTGCGGACGGCAGCTCGGCCAAAAGGAAGCGAGGCCGGCCGGCCAGGGGTACTGCTAGGGAACCGCCATTGAAGAAGAATAGGGACGAGGAGGATGTCTGCTTCATCTGTTTCGATGGTGGGAGCCTTGTTCTCTGTGATCGCCGGGGTTGTCCTAAAGCATACCACCCCGCCTGTATCAAGCGAGACGAGGCATTCTTCCGTTCCAAGGCCAAATGGAATTGCGGTTGGCATATATGTAGCATATGTCGGAAGGCATCCCATTATATGTGCTATACATGTACATATTCTTTGTGCAAGGGTTGTATAAAAGGCACCGATTTTCTCTGTGTCAGAGGGAATAAAGGTCTGTGCGGGATATGCATGAGGACCATAATGCTCATTGAGAACAGTGCACAGGGAAAAAAGGAAACGTGTGAAGTGGATTTTGATGACAAAAGCAGTTGGGAGTATCTTTTCAAGGTGTATTGGCTGTACTTGAAAGAGAAACTATCCTTAACGTTAGATGAGATCCTTCGAGCTAAAAATCCATCGAAAGGAGCTGCTGCTAATGGTTCTAAGTTAGAAATGCCTCATGAAATTCATATGCATAAAGATGACAAGGGTTCTGGGTCAGAGAACTCCTGTATAGACATAGAATCAAATAATTTAGAGAATAACCATTGTAATAGACAGCCAAGGCTTGTTAATAAGGAGGACTGCCCAAATATGAACACTTCAGCTCGTGACAAAGAGGCATCTATGGCTGAAAGCACAAAATGGGCATCGAGGGAGCTTTTAGAGTTTGTTGCACATATGAAAAATGGCGATACATCTGTCCAATCTCAACATGATGTTGAGGCTCTTTTGCTGGAGTATATAAGGAAAAACAATCTTTGTGATCCTCAACAGAAAAGCCAAGTTGTTTGTGATTCAAGACTAGTCAATTTGTTCAGAAGAGAGCGTGTAGGTCATTTTGAAATGTTAAAGCTTCTTGAATCTCATTTTCTTATAAAAGATGATGCCTCTGCCAACATTATAAGGTCAGGACCGATTGATGATGTTGCTAGTCAGATGGAGGTTAATGACAATGGTAATGATCAGCCAATTGTGGCCAATGATAAGAGACAGAAAACACGGAAAAGGGCTGAAGTGCTGCTTGATAATCCGGACGCGTATGCTGCAATAAATGCTCACAATGTAAACTTGATTTATGTGCGGCGGAATCAGATGGAGAATCTAATTGACGATTCTGAGAACTTTAGAGACATGGTTGTTGGTTCAATTGTGCGGATAAGAGTCTCTAGCAGTGATCAAAAGCAAGAGATGTATAGGCTTGTACATGTCATAGGTACCACCAGTATTGCTGAATCTTACAATATTGGCTCAAGAACAACAGGCATTGTGCTTGAAATTTCTAATTTAAACAAGAAAGAGGTCATAAAAATAAGTGAGATTTCAGATCAGGATTTCTCTGAGGATGAATGCAAACTACGACAGAGCATAAAATATGGGTTTTCAAAAAGATTGACTCTGGGAGAGCTTCTGGACAAGGCATTGACACTTCAGGCAATGAGAGTTAATGATGTAAGCTTTTCCTCCTTATCATTACTGCTCTTCAAGATTATAGTTGTTCCTTGGTTTGGCCAGCGAAGGCTGCAAGAAATTCCGAAAGTATACTCTGATCCAAATATGGACTCAATGTTTGACTCTGATGACGATGCTGAAAAGTCAGATGAAAGGAAGCAAGATGACAATATACAGTCTAAAAATTCTGGATTTAATAGAAGAGAGAGGGAGCCTAGTTCTCCAAGAAGTGAGGGTGGTGGGTGCAGAGCACTAGACTTTTTGGTCACTGCTCATGAGCAGATTGGGAATACATGTACAGTGAAGAACCAGACCAGCCCAAGTGACACAGCAAATGGCGATAGCAATAATTTAGTAGTGGCAACGTCAGGGTCATCTGCTGTTGCTTCGGACCCTCCATCCTTGCCTTTCTCTACAGGAAATGAGCAGCCATTTAATGATCTTGCAACTGATAAGTTTGCCAAGTTGCACTCCTGTAACCAGCTCCTCAACTTGTGTGGACTCTACATCTACCGTTGTTCCTGCAACAAAAGCATCACCAAAAACTCACAAATTGGTTTTCTGGAGTTGCCTGGCGATAATTCTAAGCCAACTCATTCTGAACATACGGATCAGTCTGCTGAAAATAAACGTTCCTGGAGTACTGCTTCCAGCTTAGCTGGTGGTGGGACACCACTTCCTGAAGTGACTGTTGAGTGGAGAAGATGTTCGCCAGCTCCGCCTAATCCTTCTATTGAGGAATGGGACTCCAATCTTGTCTCCGCATCTTCATTGAAGCCAGCTGAAACTGCTGGCGATTGTACTGCTACTCCATCGTCAATATGTGGTCAACTAACACATTCTTCCCCTTCCAATCCAGCCTGTAACACATCTGCGTGGCAGGCGATGATGGATGAACCGAATGATTTTGGCTCATTTGGTGAAACAGTGTCAGATCTGTTGGCAGAAATGGAGGCAATGGGATCTCTCGGTGGCTTGGAATCTCCCACATCGATCATGAGTGGTGAGGAATTGACTGAGGGTTCTAATGGCCTCAGCCCTGCAGAGGGGCTCAGCCCAATGCCTGATGCAGGTAAAGGGGATGCACTGAGCTCCACAGGAGATTTACAATTTAACTCTCAATCCACAGCGCCAGAGGTACCATTATGCCAACCAGAGGGACATTACCATCAAAGAATCTCTGGAGGGCATTCTAGCAGAAGTTCTGAAGTAGGCGGCACGAAGAATCATGTTTCAGGTAGTCAATGGAGGTCAGGTTCAGGAATTCCATCCACAGCAGCCTGGGCCATGCCTACAGATGCTACTTGGAGAATCGGGCAAGACAGCAGAAGTGGTTGGGAGGCATCTCATTTAAATACAAACTTGGGCTGGGGTGTGATGGATAATAGAGGAAATGCAAACACAGGTTGGGGAGTAGGACAGGGTCCAGTGCGAAACAGGAACCTAAATTCATACACATCCGTAGGAACCGCAGGCGCTTGGGGGAACCAATCTAGACATGGCAACGATCGATTTTCTCCTCGTGGTAGGGATATGAGTAGGGGTAGACATGTCTGGAACAGACAACCATTCGGTGGTGGAAATGGAGGCTCAAGGCCTCCGCCCAGAGGGCAGCGAATTTGTAAATTTTACGAAAGTGGGTACTGTAAGAAGGGAGCATCATGTGATTACTTGCACCCATGA 3273 0.4458 MKLKVDVKVADGSSAKRKRGRPARGTAREPPLKKNRDEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDEAFFRSKAKWNCGWHICSICRKASHYMCYTCTYSLCKGCIKGTDFLCVRGNKGLCGICMRTIMLIENSAQGKKETCEVDFDDKSSWEYLFKVYWLYLKEKLSLTLDEILRAKNPSKGAAANGSKLEMPHEIHMHKDDKGSGSENSCIDIESNNLENNHCNRQPRLVNKEDCPNMNTSARDKEASMAESTKWASRELLEFVAHMKNGDTSVQSQHDVEALLLEYIRKNNLCDPQQKSQVVCDSRLVNLFRRERVGHFEMLKLLESHFLIKDDASANIIRSGPIDDVASQMEVNDNGNDQPIVANDKRQKTRKRAEVLLDNPDAYAAINAHNVNLIYVRRNQMENLIDDSENFRDMVVGSIVRIRVSSSDQKQEMYRLVHVIGTTSIAESYNIGSRTTGIVLEISNLNKKEVIKISEISDQDFSEDECKRXRQSIKYGFSKRLTLGELLDKALTLQAMRVNDVSFSSLSLLLFKIIVVPWFGQRRLQEIPKVYSDPNMDSMFDSDDDAEKSDERKQDDNIQSKNSGFNRREREPSSPRSEGGGCRALDFLVTAHEQIGNTCTVKNQTSPSDTANGDSNNLVVATSGSSAVASDPPSLPFSTGNEQPFNDLATDKFAKLHSCNQLLNLCGLYIYRCSCNKSITKNSQIGFLELPGDNSKPTHSEHTDQSAENKRSWSTASSLAGGGTPLPEVTVEWRRCSPAPPNPSIEEWDSNLVSASSLKPAETAGDCTATPSSICGQLTHSSPSNPACNTSAWQAMMDEPNDFGSFGETVSDLLAEMEAMGSLGGLESPTSIMNXGEELTEGSNGLSPAEGLSPMPDAGKGDALSSTGDLQFNSQSTAPEVPLCQPEGHYHQRISGGHSSRSSEVGGTKNHVSGSQWRSGSGIPSTAAWAMPTDATWRIGQDSRSGWEASHLNTNLGWGVMDNRGNANTGWGVGQGPVQXNRNLNSYTSVGTAGAWGNQSRHGNDRFSPRGRDMSRGRHVWNRQPFGGGNGGSXRPPPRGQRICKFYESGYCKKGASCDYLHP 1094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5333g00001 1094 CDD SWIB-MDM2_like 262 337 - -
Pral5333g00001 1094 SMART PHD_3 41 87 IPR001965 -
Pral5333g00001 1094 MobiDBLite consensus disorder prediction 858 872 - -
Pral5333g00001 1094 MobiDBLite consensus disorder prediction 855 958 - -
Pral5333g00001 1094 MobiDBLite consensus disorder prediction 1036 1050 - -
Pral5333g00001 1094 Gene3D SWIB/MDM2 domain 248 346 IPR036885 -
Pral5333g00001 1094 FunFam Zinc finger CCCH domain-containing protein 19 31 131 - -
Pral5333g00001 1094 Pfam SWIB/MDM2 domain 264 337 IPR003121 -
Pral5333g00001 1094 MobiDBLite consensus disorder prediction 1022 1072 - -
Pral5333g00001 1094 MobiDBLite consensus disorder prediction 897 912 - -
Pral5333g00001 1094 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 130 IPR013083 -
Pral5333g00001 1094 ProSiteProfiles Plus3 domain profile. 396 529 IPR004343 GO:0003677
Pral5333g00001 1094 SMART swib_2 257 342 IPR019835 -
Pral5333g00001 1094 MobiDBLite consensus disorder prediction 631 674 - -
Pral5333g00001 1094 MobiDBLite consensus disorder prediction 563 613 - -
Pral5333g00001 1094 MobiDBLite consensus disorder prediction 1 32 - -
Pral5333g00001 1094 SUPERFAMILY Plus3-like 397 525 IPR036128 GO:0003677
Pral5333g00001 1094 SUPERFAMILY FYVE/PHD zinc finger 36 86 IPR011011 -
Pral5333g00001 1094 ProSiteProfiles SWIB/MDM2 domain profile. 256 339 IPR003121 -
Pral5333g00001 1094 MobiDBLite consensus disorder prediction 718 781 - -
Pral5333g00001 1094 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 7 684 - -
Pral5333g00001 1094 Pfam Plus-3 domain 401 504 IPR004343 GO:0003677
Pral5333g00001 1094 ProSiteProfiles Zinc finger PHD-type profile. 39 105 IPR019787 -
Pral5333g00001 1094 SUPERFAMILY CCCH zinc finger 1069 1093 IPR036855 GO:0046872
Pral5333g00001 1094 CDD PHD5_NSD 41 86 - -
Pral5333g00001 1094 ProSitePatterns Zinc finger PHD-type signature. 42 102 IPR019786 -
Pral5333g00001 1094 MobiDBLite consensus disorder prediction 572 607 - -
Pral5333g00001 1094 SUPERFAMILY SWIB/MDM2 domain 260 338 IPR036885 -
Pral5333g00001 1094 MobiDBLite consensus disorder prediction 926 954 - -
Pral5333g00001 1094 Gene3D - 397 526 IPR036128 GO:0003677
Pral5333g00001 1094 ProSiteProfiles Zinc finger C3H1-type profile. 1069 1094 IPR000571 GO:0046872
Pral5333g00001 1094 SMART rtf1 396 506 IPR004343 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5333g00001 Pral-Chr5333 2377 8319 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5333g00001 39 119 PHD Transcription Factor Family AT4G14920 34.568 5.09e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Pral5333g00001 Plus-3 8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5333g00001 - - pcin:129322136 1143.64