Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5332g00004 ATGGATAAGCCTCTCCACCTCCTGCCGGCTTCCCCCATGGACAAGCCCTCTCTTCCCGACGCTCAAAGACCGGCCTTTGACCGTTCTGACCCGACTCTCGACTTGATGACCGTCGATCCCTGCCGGTCTGCCGGGGATGCCCAGGATTCCCGGCTTCTCCCGGTTCCGGTCGCACTTGACCGCGATGCTGATGTGGCCGTGACGCAGCACGGTTGCTTGCCCGACATGAAACTCAAGGTTGATGTGAAGGTTGCGGACGGCAGCTCGGCCAAAAGGAAGCGAGGCCGGCCGGCCAGGGGTACTGCTAGGGAACCGCCATTGAAGAAGAATAGGGACGAGGAGGATGTCTGCTTCATCTGTTTCGATGGTGGGAGCCTTGTTCTCTGTGATCGCCGGGGTTGTCCTAAAGCATACCACCCCGCCTGTATCAAGCGAGACGAGGCATTCTTCCGTTCCAAGGCCAAATGGAATTGCGGTTGGCATATATGTAGCATATGTCGGAAGGCATCCCATTATATGTGCTATACATGTACATATTCTTTGTGCAAGGGTTGTATAAAAGGCACCGATTTTCTCTGTGTCAGAGGGAATAAAGGTCTGTGCGGGATATGCATGAGGACCATAATGCTCATTGAGAACAGTGCACAGGGAAAAAAGGAAACGTGTGAAGTGGATTTTGATGACAAAAGCAGTTGGGAGTATCTTTTCAAGGTGTATTGGCTGTACTTGAAAGAGAAACTATCCTTAACGTTAGATGAGATCCTTCGAGCTAAAAATCCATCGAAAGGAGCTGCTGCTAATGGTTCTAAGTTAGAAATGCCTCATGAAATTCATATGCATAAAGATGACAAGGGTTCTGGGTCAGAGAACTCCTGTATAGACATAGAATCAAATAATTTAGAGAATAACCATTGTAATAGACAGCCAAGGCTTGTTAATAAGGAGGACTGCCCAAATATGAACACTTCAGCTCGTGACAAAGAGGCATCTATGGCTGAAAGCACAAAATGGGCATCGAGGGAGCTTTTAGAGTTTGTTGCACATATGAAAAATGGCGATACATCTGTCCAATCTCAACATGATGTTGAGGCTCTTTTGCTGGAGTATATAAGGAAAAACAATCTTTGTGATCCTCAACAGAAAAGCCAAGTTGTTTGTGATTCAAGACTAGTCAATTTGTTCAGAAGAGAGCGTGTAGGTCATTTTGAAATGTTAAAGCTTCTTGAATCTCATTTTCTTATAAAAGATGATGCCTCTGCCAACATTATAAGGTCAGGACCGATTGATGATGTTGCTAGTCAGATGGAGGTTAATGACAATGGTAATGATCAGCCAATTGTGGCCAATGATAAGAGACAGAAAACACGGAAAAGGGCTGAAGTGCTGCTTGATAATCCGGACGCGTATGCTGCAATAAATGCTCACAATGTAAACTTGATTTATGTGCGGCGGAATCAGATGGAGAATCTAATTGACGATTCTGAGAACTTTAGAGACATGGTTGTTGGTTCAATTGTGCGGATAAGAGTCTCTAGCAGTGATCAAAAGCAAGAGATGTATAGGCTTGTACATGTCATAGGTACCACCAGTATTGCTGAATCTTACAATATTGGCTCAAGAACAACAGGCATTGTGCTTGAAATTTCTAATTTAAACAAGAAAGAGGTCATAAAAATAAGTGAGATTTCAGATCAGGATTTCTCTGAGGATGAATGCAAACGGTTACGACAGAGCATAAAATATGGGTTTTCAAAAAGATTGACTCTGGGAGAGCTTCTGGACAAGGCATTGACACTTCAGGCAATGAGAGTTAATGATTTGCTGGAAGGCGAGATACTGCAGCTTAACGATCTTCGTGATAGAGCAAGTGAAAAGGGACATAGAAAAGAGCTGAGAGAGTGTGTGGAGAAGTTGCAATTACTGAACTCATCTGAGGAACGCCAGCGAAGGCTGCAAGAAATTCCGAAAGTATACTCTGATCCAAATATGGACTCAATGTTTGACTCTGATGACGATGCTGAAAAGTCAGATGAAAGGAAGCAAGATGACAATATACAGTCTAAAAATTCTGGATTTAATAGAAGAGAGAGGGAGCCTAGTTCTCCAAGAAGTGAGGGTGGTGGGTGCAGAGCACTAGACTTTTTGGTCACTGCTCATGAGCAGATTGGGAATACATGTACAGTGAAGAACCAGACCAGCCCAAGTGACACAGCAAATGGCGATAGCAATAATTTAGTAGTGGCAACGTCAGGGTCATCTGCTGTTGCTTCGGACCCTCCATCCTTGCCTTTCTCTACAGGAAATGAGCAGCCATTTAATGATCTTGCAACTGATAAGGTATGGCACTACCGGGATCCATCTGGGAAGATTCAGGGACCATTTTCTTTGCTGTCGTTGTATAAGTGGAATGAAAGTGGGCATTTCCCGTCTGATCTCAGAATATGGAAAAACACTGAAGAACAAGATGACTCTATATTGTTAACTGATGTATTAAGCGGGAAGTGTTATAAAAATGCTTCATTGCCATGCAGTAGTCAGCTACTATCCTTAGGGATCAAGGCTGTGCAGGGTAACGAAGATGATATTGATTTGCCAAGTTGCACTCCTGTAACCAGCTCCTCAACTTGTGTGGACTCTACATCTACCGTTGTTCCTGCAACAAAAATCACCAAAAACTCACAAATTGGTTTTCTGGAGTTGCCTGGCGATAATTCTAAGCCAACTCATTCTGAACATACGGATCAGTCTGCTGAAAATAAACGTTCCTGGAGTACTGCTTCCAGCTTAGCTGGTGGTGGGACACCACTTCCTGAAGTGACTGTTGAGTGGAGAAGATGTTCGCCAGCTCCGCCTAATCCTTCTATTGAGGAATGGGACTCCAATCTTGTCTCCGCATCTTCATTGAAGCCAGCTGAAACTGCTGGCGATTGTACTGCTACTCCATCGTCAATATGTGGTCAACTAACACATTCTTCCCCTTCCAATCCAGCCTGTAACACATCTGCGTGGCAGGCGATGATGGATGAACCGAATGATTTTGGCTCATTTGGTGAAACAGTGTCAGATCTGTTGGCAGAAATGGAGGCAATGGGATCTCTCGGTGGCTTGGAATCTCCCACATCGATCATGAAATGTGGTGAGGAATTGACTGAGGGTTCTAATGGCCTCAGCCCTGCAGAGGGGCTCAGCCCAATGCCTGATGCAGGTAAAGGGGATGCACTGAGCTCCACAGGAGATTTACAATTTAACTCTCAATCCACAGCGCCAGAGGTACCATTATGCCAACCAGAGGGACATTACCATCAAAGAATCTCTGGAGGGCATTCTAGCAGAAGTTCTGAAGTAGGCGGCACGAAGAATCATGTTTCAGGTAGTCAATGGAGGTCAGGTTCAGGAATTCCATCCACAGCAGCCTGGGCCATGCCTACAGATGCTACTTGGAGAATCGGGCAAGACAGCAGAAGTGGTTGGGAGGCATCTCATTTAAATACAAACTTGGGCTGGGGTGTGATGGATAATAGAGGAAATGCAAACACAGGTTGGGGAGTAGGACAGGGTCCAGTGCAGGAAAACAGGAACCTAAATTCATACACATCCGTAGGAACCGCAGGCGCTTGGGGGAACCAATCTAGACATGGCAACGATCGATTTTCTCCTCGTGGTAGGGATATGAGTAGGGGTAGACATGTCTGGAACAGACAACCATTCGGTGGTGGAAATGGAGGCTCCCAAAGGCCTCCGCCCAGAGGGCAGCGAATTTGTAAATTTTACGAAAGTGGGTACTGTAAGAAGGGAGCATCATGTGATTACTTGCACCCATGA 3822 0.4558 MDKPLHLLPASPMDKPSLPDAQRPAFDRSDPTLDLMTVDPCRSAGDAQDSRLLPVPVALDRDADVAVTQHGCLPDMKLKVDVKVADGSSAKRKRGRPARGTAREPPLKKNRDEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDEAFFRSKAKWNCGWHICSICRKASHYMCYTCTYSLCKGCIKGTDFLCVRGNKGLCGICMRTIMLIENSAQGKKETCEVDFDDKSSWEYLFKVYWLYLKEKLSLTLDEILRAKNPSKGAAANGSKLEMPHEIHMHKDDKGSGSENSCIDIESNNLENNHCNRQPRLVNKEDCPNMNTSARDKEASMAESTKWASRELLEFVAHMKNGDTSVQSQHDVEALLLEYIRKNNLCDPQQKSQVVCDSRLVNLFRRERVGHFEMLKLLESHFLIKDDASANIIRSGPIDDVASQMEVNDNGNDQPIVANDKRQKTRKRAEVLLDNPDAYAAINAHNVNLIYVRRNQMENLIDDSENFRDMVVGSIVRIRVSSSDQKQEMYRLVHVIGTTSIAESYNIGSRTTGIVLEISNLNKKEVIKISEISDQDFSEDECKRLRQSIKYGFSKRLTLGELLDKALTLQAMRVNDLLEGEILQLNDLRDRASEKGHRKELRECVEKLQLLNSSEERQRRLQEIPKVYSDPNMDSMFDSDDDAEKSDERKQDDNIQSKNSGFNRREREPSSPRSEGGGCRALDFLVTAHEQIGNTCTVKNQTSPSDTANGDSNNLVVATSGSSAVASDPPSLPFSTGNEQPFNDLATDKVWHYRDPSGKIQGPFSLLSLYKWNESGHFPSDLRIWKNTEEQDDSILLTDVLSGKCYKNASLPCSSQLLSLGIKAVQGNEDDIDLPSCTPVTSSSTCVDSTSTVVPATKITKNSQIGFLELPGDNSKPTHSEHTDQSAENKRSWSTASSLAGGGTPLPEVTVEWRRCSPAPPNPSIEEWDSNLVSASSLKPAETAGDCTATPSSICGQLTHSSPSNPACNTSAWQAMMDEPNDFGSFGETVSDLLAEMEAMGSLGGLESPTSIMKCGEELTEGSNGLSPAEGLSPMPDAGKGDALSSTGDLQFNSQSTAPEVPLCQPEGHYHQRISGGHSSRSSEVGGTKNHVSGSQWRSGSGIPSTAAWAMPTDATWRIGQDSRSGWEASHLNTNLGWGVMDNRGNANTGWGVGQGPVQENRNLNSYTSVGTAGAWGNQSRHGNDRFSPRGRDMSRGRHVWNRQPFGGGNGGSQRPPPRGQRICKFYESGYCKKGASCDYLHP 1273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5332g00004 1273 Coils Coil 628 648 - -
Pral5332g00004 1273 MobiDBLite consensus disorder prediction 84 107 - -
Pral5332g00004 1273 FunFam Zinc finger CCCH domain-containing protein 19 106 206 - -
Pral5332g00004 1273 MobiDBLite consensus disorder prediction 1091 1137 - -
Pral5332g00004 1273 SMART swib_2 332 417 IPR019835 -
Pral5332g00004 1273 Pfam SWIB/MDM2 domain 339 412 IPR003121 -
Pral5332g00004 1273 SUPERFAMILY CCCH zinc finger 1248 1272 IPR036855 GO:0046872
Pral5332g00004 1273 MobiDBLite consensus disorder prediction 668 703 - -
Pral5332g00004 1273 MobiDBLite consensus disorder prediction 1215 1229 - -
Pral5332g00004 1273 CDD SWIB-MDM2_like 337 412 - -
Pral5332g00004 1273 MobiDBLite consensus disorder prediction 1048 1079 - -
Pral5332g00004 1273 ProSiteProfiles GYF domain profile. 778 832 IPR003169 GO:0005515
Pral5332g00004 1273 ProSiteProfiles Zinc finger C3H1-type profile. 1248 1273 IPR000571 GO:0046872
Pral5332g00004 1273 Pfam GYF domain 781 821 IPR003169 GO:0005515
Pral5332g00004 1273 MobiDBLite consensus disorder prediction 727 760 - -
Pral5332g00004 1273 MobiDBLite consensus disorder prediction 1202 1250 - -
Pral5332g00004 1273 SUPERFAMILY SWIB/MDM2 domain 335 413 IPR036885 -
Pral5332g00004 1273 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 204 IPR013083 -
Pral5332g00004 1273 SUPERFAMILY FYVE/PHD zinc finger 112 168 IPR011011 -
Pral5332g00004 1273 Pfam Plus-3 domain 476 579 IPR004343 GO:0003677
Pral5332g00004 1273 MobiDBLite consensus disorder prediction 653 709 - -
Pral5332g00004 1273 ProSiteProfiles Plus3 domain profile. 471 604 IPR004343 GO:0003677
Pral5332g00004 1273 MobiDBLite consensus disorder prediction 1 47 - -
Pral5332g00004 1273 Gene3D - 780 835 IPR035445 -
Pral5332g00004 1273 ProSiteProfiles Zinc finger PHD-type profile. 114 180 IPR019787 -
Pral5332g00004 1273 SMART PHD_3 116 162 IPR001965 -
Pral5332g00004 1273 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 870 1273 - -
Pral5332g00004 1273 SMART rtf1 471 581 IPR004343 GO:0003677
Pral5332g00004 1273 Coils Coil 605 625 - -
Pral5332g00004 1273 CDD GYF 778 833 IPR003169 GO:0005515
Pral5332g00004 1273 MobiDBLite consensus disorder prediction 895 937 - -
Pral5332g00004 1273 ProSiteProfiles SWIB/MDM2 domain profile. 331 414 IPR003121 -
Pral5332g00004 1273 SUPERFAMILY Plus3-like 472 600 IPR036128 GO:0003677
Pral5332g00004 1273 SUPERFAMILY GYF domain 771 831 IPR035445 -
Pral5332g00004 1273 Gene3D SWIB/MDM2 domain 323 421 IPR036885 -
Pral5332g00004 1273 ProSitePatterns Zinc finger PHD-type signature. 117 177 IPR019786 -
Pral5332g00004 1273 SMART gyf_5 779 834 IPR003169 GO:0005515
Pral5332g00004 1273 Gene3D - 472 601 IPR036128 GO:0003677
Pral5332g00004 1273 MobiDBLite consensus disorder prediction 1105 1133 - -
Pral5332g00004 1273 CDD PHD5_NSD 116 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5332g00004 Pral-Chr5332 25307 31795 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5332g00004 114 194 PHD Transcription Factor Family AT4G14920 34.568 6.47e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI or SNF-BAF60b Pral5332g00004 Plus-3 1.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5332g00004 - - pcin:129322136 2163.65