Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5332g00001 ATGCGAACGCTTTGCGACGCTTGTGAGAGCGCTGCCGCCATCGTATTCTGCGCCGCCGACGAGGCCGCGCTCTGCCGTGCCTGCGATGAAAAGGTTCACATGTGCAATAAGCTAGCTAGCCGGCATATCCGGGTTGGCCTTGCTAGTCCAAGTGATGTGCCACGCTGTGACATTTGTGAGAATGAACCTGCTTTCTTTTATTGCGAGACAGATGGAACTTCTCTGTGTTTGCAATGTGACATGATAGTTCATGTCGGAGGTAAAAGAACACACGGGAGATACCTTCTTTTCAGGCAGCGGGTTGAATTTCCAGGAGATAAACCTGGTCACGCAGAAACCTCGGCTTCACAGTCTCTGGACGCGGTTGAGACCAAACGAGGCCAAAATTCATTGCTCAAAATAAAAATGGGAGAGAAACAACAAAATCACAGGATGCCAACCCCAGAACATGATGCTGATGGGTATGCCAAGATGGATGCTAAAATGATTGATCTGAACATGAAGCCTCAAAGAATACACGAACACGGGTCAAATAATCAGCCATAA 546 0.4835 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHIRVGLASPSDVPRCDICENEPAFFYCETDGTSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDKPGHAETSASQSLDAVETKRGQNSLLKIKMGEKQQNHRMPTPEHDADGYAKMDAKMIDLNMKPQRIHEHGSNNQP 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5332g00001 181 SMART bboxneu5 51 96 IPR000315 GO:0008270
Pral5332g00001 181 SMART bboxneu5 1 47 IPR000315 GO:0008270
Pral5332g00001 181 SUPERFAMILY B-box zinc-binding domain 48 86 - -
Pral5332g00001 181 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Pral5332g00001 181 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Pral5332g00001 181 Gene3D Classic Zinc Finger 2 92 - -
Pral5332g00001 181 CDD Bbox1_BBX-like 4 47 - -
Pral5332g00001 181 FunFam B-box zinc finger protein 19 2 92 - -
Pral5332g00001 181 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 146 - -
Pral5332g00001 181 Pfam B-box zinc finger 3 34 IPR000315 GO:0008270
Pral5332g00001 181 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5332g00001 Pral-Chr5332 5349 8157 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5332g00001 1 180 C2C2-CO-like Transcription Factor Family AT4G38960 62.222 8.69e-78 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Pral5332g00001 zf-B_box 3.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5332g00001 - - gmx:100780544 328.561