Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5331g00105 ATGTCGTCCGTCGAAGAAGGTGATCGCGCTGCTGTTGATCAGCCTGCAGAGGAGCCTAAGCCAGTGACCAAGGAGAAGAAGCCTAAGGTTCCAAAGGAGAAGAAGCCCAAGCAGGCGAAAACGGTTTCTCATCCGCCATATTTTCAGATGATTGAGGAAGCTTTACTGGCTCTGAACGAGAAGGGCGGCTCCAGCCCTTACGCCATAGCCAAGTACATGGAGGAGAAGCATAAGTCGGTTCTCCCAGCGAATTTCAGGAAGATCTTGGCTCTTCAGCTGAAGAACCAAGCTGCGAGAGGAAAGCTCATCAAGATCAAGGCTTCCTACAAGCTATCCTCTGAGTCTGTTAAGAAGGGCAGGGACACCACCCGGAGGGTCACAAGGTCGGCCACAGCTCAGCGCTCTAAGCGAAGCGCGTCTAAGAAAACAGAGACAGGTAAGAAGGTTAGGAAGGGAGCGAGGAAAGTGGTTGGGGTGCAGAAGATGAAGAAATCATCCACGTCTGCGAAGCCGAAGCAGCCTAAGTCTCTAGATCTTCATCCAAGAGGACCAGAAAAGTTACTGCGTCAGCTTCATGAAAGTCGCTATAGTCTGAATGGAAACAAGGCCTTTTAG 615 0.5089 MSSVEEGDRAAVDQPAEEPKPVTKEKKPKVPKEKKPKQAKTVSHPPYFQMIEEALLALNEKGGSSPYAIAKYMEEKHKSVLPANFRKILALQLKNQAARGKLIKIKASYKLSSESVKKGRDTTRRVTRSATAQRSKRSASKKTETGKKVRKGARKVVGVQKMKKSSTSAKPKQPKSLDLHPRGPEKLLRQLHESRYSLNGNKAF 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5331g00105 204 MobiDBLite consensus disorder prediction 175 192 - -
Pral5331g00105 204 SUPERFAMILY "Winged helix" DNA-binding domain 40 120 IPR036390 -
Pral5331g00105 204 Pfam linker histone H1 and H5 family 44 110 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pral5331g00105 204 MobiDBLite consensus disorder prediction 113 127 - -
Pral5331g00105 204 SMART h15plus2 41 108 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pral5331g00105 204 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 43 113 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pral5331g00105 204 MobiDBLite consensus disorder prediction 10 29 - -
Pral5331g00105 204 MobiDBLite consensus disorder prediction 1 46 - -
Pral5331g00105 204 MobiDBLite consensus disorder prediction 113 204 - -
Pral5331g00105 204 Gene3D - 38 125 IPR036388 -
Pral5331g00105 204 PANTHER HISTONE H1 15 172 - -
Pral5331g00105 204 CDD H15 41 118 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pral5331g00105 204 PRINTS Histone H5 signature 30 51 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pral5331g00105 204 PRINTS Histone H5 signature 57 74 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pral5331g00105 204 PRINTS Histone H5 signature 163 180 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5331g00105 Pral-Chr5331 529298 530435 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5331g00105 30 111 Single Myb Histone (SMH) Gene Family AT1G72740 39.024 1.91e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5331g00105 K11275 - gmx:100500169 188.734