Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5331g00104 ATGCGAACTAGGAACGCTGGTTCTTCTAAAACAGCGGCGGCTAAGAAGACACCGCCGACGAGGAAATCCGCATCTAAAAGCCCGGCGAACGCACAATCCCCTCAGACCAAGCGCACCTCTACGATCAAAACTAGGCAGGCCAAGAAGAACGAGGCCTCGCCCTTACAAAACACAAGCGTTGATGAGGAACCGGAGCTATTATCTGATGAGGCAAAAGCAGAGGCTGATGCTTCTCAGGTGACACCAGAGACAAAAGTTGTTACAGTTGCAAAGTCAGCACCAAAGAGGACGCCAAAGAGAGCAGTGGGAAGGCCTAGGAATTCAACTAAAGCCATTACTACCCGGGAACAAGAAGAACAAGTGGAGGCAATAACTGATGAAACACCGAAAATGGATGATGTTGAAGTAGCTGAGAAATTGGAGGAGCCTTTAAATGTTAATGTAGTCAAAGCAGATGAAATTGAAAATAAGGAAGTGGACGAACAAGGTGTTGAGTTTGTTAGACAATCTGCAGGGAATGAACAACATCCCAAAGTAGGGGATGAGTGTAATGCTGATAGTGCTTGTGAGTTAGAAGAAAAGAGAAGAGACATAGTTGAAGACGTTGTATCTGCCTCCCAAGGTGTCCCTTTTTTATTGAATCAAGAAGAACCTACCATGATGGAGCACTCTGAATCTCTGGAGAATGAAGAACCCACTAGTGCAAAAGAAGGAGAACAAACAAATGAAGAGGATGGGGAAAAAGCATCAGAAAAATCAATGAATGAACAGACAACTTGTAGTGGAATTAAAGAGCTATGTGATTCTGATTCTGTCAGCATGGAAATAAAAGACCAAAGAGAGCAAGTGAAGGAAGAGGATGGAGAAAAAGAATCAGAAAAATCAATGGAAAAGGAGGGAGAAGGGGCATTAGAGAAATCCATGCAAGAGGAGACAAGTAATATTATACATAACCAGGAATCTAATACTGATTCTGTTGAGAAGGAAATGACAAACCAATTTCTGCAAGATGATGTTAAACCTGGAAAGGAGAACCCAAGTGGTGATCAAGGTGGCAAGGGTTCTGAGGAAAGGCTGAATCGTGAAGAACAAGGGGGGAAGGAGCTTGAGGCTGATCGAGGGGAGCCTCTTGAAGAAGCTGAGACATTGGATGAGGAACGCAAGGAATTGTCAACTATGGCGAAGGAGCGCAAGATTAAGAAAGAGAATGAAATATTTGTTGGTGGGCTTGATCGTGATGCTACAGAGGAAGATCTTAAAAAGGTTTTTGAGAAGATTGGGGAGATAGTTGAAGTCAGGTTGCATAAAGATTCTTCAACAAACAAAAATAAGGGCTATGCATTTGTAAAATTTTCTTGCAAGGAGCATGCAAAGAAAGCTTTGTCAGAAATCAAAAGTCCTATTATATGTGGTAAGCGATGTGGCATTGCACCCAGTGAGGATAATGACACATTATTCTTAGGAAATATATGCAATACATGGACAAAAGAAGCGATCAAACAGAAGTTGAAGGATTATGGTGTTGAGGGTGTTGAAAACATTACACTCGTCCCAGATGTTCACCGTGAAGGATTAAGCCGGGGCTTTGCATTTCTTGAGTTCTCCTGTCATCATGATGCCATGCTTGCCTATAAGAGGCTTCAAAAGCCTGATGTAGTCTTTGGACATGCTGATCGAACTGTCAAAGTTGCCTTCGCTGAACCTGCTCGAGAGCTGGATCCAGAGATCATGGCACAGGTGAAGTCTGTCTTCGTTGATGGTCTTCCTCCTCACTGGGACGAGGGCTGCATTAGGGAGCACCTTAAAGGTTATGGTGAAATTGTACGAATTGTGCTTGCCCGGAATATGACTACTGCTAAGAGGAAAGACTTTGGATTTGTTGATTTCTCTACACATGAAGCCGCTGTAGCTTGTGTTGATGGTGTGAATAGTTCAGAATTTGTTGATGGAAAAGAAAAGATAAAAGTGAGAGCTAGACTTTCAAATCCTCTGCCTAAAACACAGGCTGTCAAGGGAGGCATGTGTGGTGGGTTCCGAATTGGTCATGCTCGGGGTGGAGCTTTTCCACGATCTGGGAGGGGTTTTGCTCGTGGAGGACATGCTGTCAACTGGGGAAATTTTAATAGGGATCGGAATTTTTATCATGGAGGATATGGTCAAATTGGAAGAATGGGTTTCAGTAATGATCTTAATCTGAATAATGCTTATCCAGATTTTCATCAGAGGCAACTTGGGGAACGGATGATTCCTTTGAGGGGTGGACACTATGCAGGTGCACAAGGTGCTGCAGTTGCTGGTCCATCTAGGCCTCATCTTGACAGAGCCTGGTATGGCACCCCTGAGAGAGGCCCTGGTGAACCTATTCCCCCAAGGACGCCATTCTCCCCTGAAGGACAGTTTGACAGGCCTTTTATTGGAAGGCATATTGATGATCCATATTTTTATGAAGACAGTGTGCATGGGGTGAAACGGCCATTTTATATGACTGACCCAGATCCTAGTTACATGGGGCCCGTTAGACTTCGTCCTCGACTGGATTATACAGATCCTGCTGTATTTCATGGCAGTCGTTACCATGATTCTATTGCTTCTGGCAGGGGACAGTACCCACATGATTATTATGGTGCTGATTATGGTGGGGGTCCATATTCATCTTTTTATGGGGGTGAAAACTCACATGGGCGAAGATACCACTACTAG 2700 0.4407 MRTRNAGSSKTAAAKKTPPTRKSASKSPANAQSPQTKRTSTIKTRQAKKNEASPLQNTSVDEEPELLSDEAKAEADASQVTPETKVVTVAKSAPKRTPKRAVGRPRNSTKAITTREQEEQVEAITDETPKMDDVEVAEKLEEPLNVNVVKADEIENKEVDEQGVEFVRQSAGNEQHPKVGDECNADSACELEEKRRDIVEDVVSASQGVPFLLNQEEPTMMEHSESLENEEPTSAKEGEQTNEEDGEKASEKSMNEQTTCSGIKELCDSDSVSMEIKDQREQVKEEDGEKESEKSMEKEGEGALEKSMQEETSNIIHNQESNTDSVEKEMTNQFLQDDVKPGKENPSGDQGGKGSEERLNREEQGGKELEADRGEPLEEAETLDEERKELSTMAKERKIKKENEIFVGGLDRDATEEDLKKVFEKIGEIVEVRLHKDSSTNKNKGYAFVKFSCKEHAKKALSEIKSPIICGKRCGIAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGVEGVENITLVPDVHREGLSRGFAFLEFSCHHDAMLAYKRLQKPDVVFGHADRTVKVAFAEPARELDPEIMAQVKSVFVDGLPPHWDEGCIREHLKGYGEIVRIVLARNMTTAKRKDFGFVDFSTHEAAVACVDGVNSSEFVDGKEKIKVRARLSNPLPKTQAVKGGMCGGFRIGHARGGAFPRSGRGFARGGHAVNWGNFNRDRNFYHGGYGQIGRMGFSNDLNLNNAYPDFHQRQLGERMIPLRGGHYAGAQGAAVAGPSRPHLDRAWYGTPERGPGEPIPPRTPFSPEGQFDRPFIGRHIDDPYFYEDSVHGVKRPFYMTDPDPSYMGPVRLRPRLDYTDPAVFHGSRYHDSIASGRGQYPHDYYGADYGGGPYSSFYGGENSHGRRYHY 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5331g00104 899 SUPERFAMILY RNA-binding domain, RBD 481 654 IPR035979 GO:0003676
Pral5331g00104 899 FunFam Heterogeneous nuclear ribonucleoprotein Q 568 718 - -
Pral5331g00104 899 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 39 895 - -
Pral5331g00104 899 Coils Coil 383 403 - -
Pral5331g00104 899 MobiDBLite consensus disorder prediction 221 252 - -
Pral5331g00104 899 MobiDBLite consensus disorder prediction 209 390 - -
Pral5331g00104 899 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 583 650 IPR000504 GO:0003723
Pral5331g00104 899 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 485 554 IPR000504 GO:0003723
Pral5331g00104 899 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 405 472 IPR000504 GO:0003723
Pral5331g00104 899 CDD RRM_SF 485 563 - -
Pral5331g00104 899 MobiDBLite consensus disorder prediction 307 332 - -
Pral5331g00104 899 CDD RRM_SF 405 474 - -
Pral5331g00104 899 Gene3D - 483 567 IPR012677 -
Pral5331g00104 899 MobiDBLite consensus disorder prediction 1 62 - -
Pral5331g00104 899 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 403 481 IPR000504 GO:0003723
Pral5331g00104 899 FunFam Heterogeneous nuclear ribonucleoprotein Q 483 567 - -
Pral5331g00104 899 MobiDBLite consensus disorder prediction 350 390 - -
Pral5331g00104 899 MobiDBLite consensus disorder prediction 270 306 - -
Pral5331g00104 899 SUPERFAMILY RNA-binding domain, RBD 400 480 IPR035979 GO:0003676
Pral5331g00104 899 MobiDBLite consensus disorder prediction 1 130 - -
Pral5331g00104 899 Gene3D - 336 482 IPR012677 -
Pral5331g00104 899 CDD RRM_SF 583 657 - -
Pral5331g00104 899 Gene3D - 569 724 IPR012677 -
Pral5331g00104 899 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 483 568 IPR000504 GO:0003723
Pral5331g00104 899 MobiDBLite consensus disorder prediction 111 130 - -
Pral5331g00104 899 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 581 661 IPR000504 GO:0003723
Pral5331g00104 899 SMART rrm1_1 582 657 IPR000504 GO:0003723
Pral5331g00104 899 SMART rrm1_1 484 564 IPR000504 GO:0003723
Pral5331g00104 899 SMART rrm1_1 404 477 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5331g00104 Pral-Chr5331 519072 524783 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5331g00104 405 649 Eukaryotic Initiation Factors Gene Family AT2G23350 26.000 2.56e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5331g00104 - - pcin:129322150 1387.47