Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pral5331g00104 | ATGCGAACTAGGAACGCTGGTTCTTCTAAAACAGCGGCGGCTAAGAAGACACCGCCGACGAGGAAATCCGCATCTAAAAGCCCGGCGAACGCACAATCCCCTCAGACCAAGCGCACCTCTACGATCAAAACTAGGCAGGCCAAGAAGAACGAGGCCTCGCCCTTACAAAACACAAGCGTTGATGAGGAACCGGAGCTATTATCTGATGAGGCAAAAGCAGAGGCTGATGCTTCTCAGGTGACACCAGAGACAAAAGTTGTTACAGTTGCAAAGTCAGCACCAAAGAGGACGCCAAAGAGAGCAGTGGGAAGGCCTAGGAATTCAACTAAAGCCATTACTACCCGGGAACAAGAAGAACAAGTGGAGGCAATAACTGATGAAACACCGAAAATGGATGATGTTGAAGTAGCTGAGAAATTGGAGGAGCCTTTAAATGTTAATGTAGTCAAAGCAGATGAAATTGAAAATAAGGAAGTGGACGAACAAGGTGTTGAGTTTGTTAGACAATCTGCAGGGAATGAACAACATCCCAAAGTAGGGGATGAGTGTAATGCTGATAGTGCTTGTGAGTTAGAAGAAAAGAGAAGAGACATAGTTGAAGACGTTGTATCTGCCTCCCAAGGTGTCCCTTTTTTATTGAATCAAGAAGAACCTACCATGATGGAGCACTCTGAATCTCTGGAGAATGAAGAACCCACTAGTGCAAAAGAAGGAGAACAAACAAATGAAGAGGATGGGGAAAAAGCATCAGAAAAATCAATGAATGAACAGACAACTTGTAGTGGAATTAAAGAGCTATGTGATTCTGATTCTGTCAGCATGGAAATAAAAGACCAAAGAGAGCAAGTGAAGGAAGAGGATGGAGAAAAAGAATCAGAAAAATCAATGGAAAAGGAGGGAGAAGGGGCATTAGAGAAATCCATGCAAGAGGAGACAAGTAATATTATACATAACCAGGAATCTAATACTGATTCTGTTGAGAAGGAAATGACAAACCAATTTCTGCAAGATGATGTTAAACCTGGAAAGGAGAACCCAAGTGGTGATCAAGGTGGCAAGGGTTCTGAGGAAAGGCTGAATCGTGAAGAACAAGGGGGGAAGGAGCTTGAGGCTGATCGAGGGGAGCCTCTTGAAGAAGCTGAGACATTGGATGAGGAACGCAAGGAATTGTCAACTATGGCGAAGGAGCGCAAGATTAAGAAAGAGAATGAAATATTTGTTGGTGGGCTTGATCGTGATGCTACAGAGGAAGATCTTAAAAAGGTTTTTGAGAAGATTGGGGAGATAGTTGAAGTCAGGTTGCATAAAGATTCTTCAACAAACAAAAATAAGGGCTATGCATTTGTAAAATTTTCTTGCAAGGAGCATGCAAAGAAAGCTTTGTCAGAAATCAAAAGTCCTATTATATGTGGTAAGCGATGTGGCATTGCACCCAGTGAGGATAATGACACATTATTCTTAGGAAATATATGCAATACATGGACAAAAGAAGCGATCAAACAGAAGTTGAAGGATTATGGTGTTGAGGGTGTTGAAAACATTACACTCGTCCCAGATGTTCACCGTGAAGGATTAAGCCGGGGCTTTGCATTTCTTGAGTTCTCCTGTCATCATGATGCCATGCTTGCCTATAAGAGGCTTCAAAAGCCTGATGTAGTCTTTGGACATGCTGATCGAACTGTCAAAGTTGCCTTCGCTGAACCTGCTCGAGAGCTGGATCCAGAGATCATGGCACAGGTGAAGTCTGTCTTCGTTGATGGTCTTCCTCCTCACTGGGACGAGGGCTGCATTAGGGAGCACCTTAAAGGTTATGGTGAAATTGTACGAATTGTGCTTGCCCGGAATATGACTACTGCTAAGAGGAAAGACTTTGGATTTGTTGATTTCTCTACACATGAAGCCGCTGTAGCTTGTGTTGATGGTGTGAATAGTTCAGAATTTGTTGATGGAAAAGAAAAGATAAAAGTGAGAGCTAGACTTTCAAATCCTCTGCCTAAAACACAGGCTGTCAAGGGAGGCATGTGTGGTGGGTTCCGAATTGGTCATGCTCGGGGTGGAGCTTTTCCACGATCTGGGAGGGGTTTTGCTCGTGGAGGACATGCTGTCAACTGGGGAAATTTTAATAGGGATCGGAATTTTTATCATGGAGGATATGGTCAAATTGGAAGAATGGGTTTCAGTAATGATCTTAATCTGAATAATGCTTATCCAGATTTTCATCAGAGGCAACTTGGGGAACGGATGATTCCTTTGAGGGGTGGACACTATGCAGGTGCACAAGGTGCTGCAGTTGCTGGTCCATCTAGGCCTCATCTTGACAGAGCCTGGTATGGCACCCCTGAGAGAGGCCCTGGTGAACCTATTCCCCCAAGGACGCCATTCTCCCCTGAAGGACAGTTTGACAGGCCTTTTATTGGAAGGCATATTGATGATCCATATTTTTATGAAGACAGTGTGCATGGGGTGAAACGGCCATTTTATATGACTGACCCAGATCCTAGTTACATGGGGCCCGTTAGACTTCGTCCTCGACTGGATTATACAGATCCTGCTGTATTTCATGGCAGTCGTTACCATGATTCTATTGCTTCTGGCAGGGGACAGTACCCACATGATTATTATGGTGCTGATTATGGTGGGGGTCCATATTCATCTTTTTATGGGGGTGAAAACTCACATGGGCGAAGATACCACTACTAG | 2700 | 0.4407 | MRTRNAGSSKTAAAKKTPPTRKSASKSPANAQSPQTKRTSTIKTRQAKKNEASPLQNTSVDEEPELLSDEAKAEADASQVTPETKVVTVAKSAPKRTPKRAVGRPRNSTKAITTREQEEQVEAITDETPKMDDVEVAEKLEEPLNVNVVKADEIENKEVDEQGVEFVRQSAGNEQHPKVGDECNADSACELEEKRRDIVEDVVSASQGVPFLLNQEEPTMMEHSESLENEEPTSAKEGEQTNEEDGEKASEKSMNEQTTCSGIKELCDSDSVSMEIKDQREQVKEEDGEKESEKSMEKEGEGALEKSMQEETSNIIHNQESNTDSVEKEMTNQFLQDDVKPGKENPSGDQGGKGSEERLNREEQGGKELEADRGEPLEEAETLDEERKELSTMAKERKIKKENEIFVGGLDRDATEEDLKKVFEKIGEIVEVRLHKDSSTNKNKGYAFVKFSCKEHAKKALSEIKSPIICGKRCGIAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGVEGVENITLVPDVHREGLSRGFAFLEFSCHHDAMLAYKRLQKPDVVFGHADRTVKVAFAEPARELDPEIMAQVKSVFVDGLPPHWDEGCIREHLKGYGEIVRIVLARNMTTAKRKDFGFVDFSTHEAAVACVDGVNSSEFVDGKEKIKVRARLSNPLPKTQAVKGGMCGGFRIGHARGGAFPRSGRGFARGGHAVNWGNFNRDRNFYHGGYGQIGRMGFSNDLNLNNAYPDFHQRQLGERMIPLRGGHYAGAQGAAVAGPSRPHLDRAWYGTPERGPGEPIPPRTPFSPEGQFDRPFIGRHIDDPYFYEDSVHGVKRPFYMTDPDPSYMGPVRLRPRLDYTDPAVFHGSRYHDSIASGRGQYPHDYYGADYGGGPYSSFYGGENSHGRRYHY | 899 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pral5331g00104 | 899 | SUPERFAMILY | RNA-binding domain, RBD | 481 | 654 | IPR035979 | GO:0003676 | |
Pral5331g00104 | 899 | FunFam | Heterogeneous nuclear ribonucleoprotein Q | 568 | 718 | - | - | |
Pral5331g00104 | 899 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN | 39 | 895 | - | - | |
Pral5331g00104 | 899 | Coils | Coil | 383 | 403 | - | - | |
Pral5331g00104 | 899 | MobiDBLite | consensus disorder prediction | 221 | 252 | - | - | |
Pral5331g00104 | 899 | MobiDBLite | consensus disorder prediction | 209 | 390 | - | - | |
Pral5331g00104 | 899 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 583 | 650 | IPR000504 | GO:0003723 | |
Pral5331g00104 | 899 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 485 | 554 | IPR000504 | GO:0003723 | |
Pral5331g00104 | 899 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 405 | 472 | IPR000504 | GO:0003723 | |
Pral5331g00104 | 899 | CDD | RRM_SF | 485 | 563 | - | - | |
Pral5331g00104 | 899 | MobiDBLite | consensus disorder prediction | 307 | 332 | - | - | |
Pral5331g00104 | 899 | CDD | RRM_SF | 405 | 474 | - | - | |
Pral5331g00104 | 899 | Gene3D | - | 483 | 567 | IPR012677 | - | |
Pral5331g00104 | 899 | MobiDBLite | consensus disorder prediction | 1 | 62 | - | - | |
Pral5331g00104 | 899 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 403 | 481 | IPR000504 | GO:0003723 | |
Pral5331g00104 | 899 | FunFam | Heterogeneous nuclear ribonucleoprotein Q | 483 | 567 | - | - | |
Pral5331g00104 | 899 | MobiDBLite | consensus disorder prediction | 350 | 390 | - | - | |
Pral5331g00104 | 899 | MobiDBLite | consensus disorder prediction | 270 | 306 | - | - | |
Pral5331g00104 | 899 | SUPERFAMILY | RNA-binding domain, RBD | 400 | 480 | IPR035979 | GO:0003676 | |
Pral5331g00104 | 899 | MobiDBLite | consensus disorder prediction | 1 | 130 | - | - | |
Pral5331g00104 | 899 | Gene3D | - | 336 | 482 | IPR012677 | - | |
Pral5331g00104 | 899 | CDD | RRM_SF | 583 | 657 | - | - | |
Pral5331g00104 | 899 | Gene3D | - | 569 | 724 | IPR012677 | - | |
Pral5331g00104 | 899 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 483 | 568 | IPR000504 | GO:0003723 | |
Pral5331g00104 | 899 | MobiDBLite | consensus disorder prediction | 111 | 130 | - | - | |
Pral5331g00104 | 899 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 581 | 661 | IPR000504 | GO:0003723 | |
Pral5331g00104 | 899 | SMART | rrm1_1 | 582 | 657 | IPR000504 | GO:0003723 | |
Pral5331g00104 | 899 | SMART | rrm1_1 | 484 | 564 | IPR000504 | GO:0003723 | |
Pral5331g00104 | 899 | SMART | rrm1_1 | 404 | 477 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pral5331g00104 | Pral-Chr5331 | 519072 | 524783 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pral5331g00104 | 405 | 649 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 26.000 | 2.56e-14 | 75.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pral5331g00104 | - | - | pcin:129322150 | 1387.47 |