Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5331g00099 ATGAAGCGGGCAAGGAAATCGAAGAGGGTTTCGTGGGCTCCTGGATTTAATCTGTGTCAGGTGAAGTTGTTCTTATCTGAGGACTGCCCTTCGAAAGTTAGCCAGACATCTCAAGATCTTCTTCAAGCAAAGACATCATCTATTTTGCATTCAAGCACTAATGAATCTCATGATTTGCCTCCTGGCTTTGAAGACAATCATATTTCGAACCATCTAAGGAATGAACTCTCCCACTTATATCAGATTAAATGGAAAACTCCTCCCCTGTTTGCCCTCTGTCAAAATTGGCTGGTTGCGGCTGGTGAAGAGAGTAGGGAGAAAGTGGATCAAAAGCTGAGAGAAATGAAGGTGCTTGAAGCAGTATATCCTCGCCCTTCAGCTATTCCTCCAAGTCCCTCTGTTTCTTTAGATGTAGAGGAGGAAGACTACGATGATAACCTCACTCCTCTTATCCCTATCGTTCCTATTGAGGAAGAAGAGCTTATGGATGTTAAACCTGAATTGCCAGCGACAATTGACACCTCCGCCACTCTTCAGACACAAAGTTTGCACCATTCCATATCAGCAACAGATAGACCCATATGTTCACAGCTTAGTACCTCATCCACTCTAGCCTCACCTGGGACATCTGGTGTGGAAGCAGATGTTGCAGCAGCTTCTGCTGTTGTTGCTGCCATCATGAATAGTAATGAGCAAGGCAGCTCAATTGACATGGATCTACTTGTTAAAATACTTAATGATCCGTTGTTGATTGAGAAGTTGAGAAGTGTTCATGATGGAGCTGCTGCAACCACTGCAAGTGCATCCGCAAATTTAGTGGGTTTACCTATTTCTGGAGTTAAGTGCACTTCTCCATCAGTTTCATCATTTCCGCTTACACCTGATAAGCCAACTTCTGGGGTTAGTCCCTCAAATATTGTGGGTTTATTTCCTGATTCTGGCTTGATGCCAGTCACTCCTTCAGTTCAATTGATGCATACAGTTGATAAGCCAGGAACCGCGACACTTCCATTTTCTAGGCCTGTGCCGGGGAAACTAGGAACTCCTTCAGCTCCATTGCCTTCGCATACAATTGCTGCTGATATTCACAAGCCTGTGAACAAAACCACTGACCATTGGTCAAGTGGGGGCCTGCCTTCTGTAAGTACCCAACGTTCTCAACAAGATACAGTTAAGCAAGCAGCACCCATGGCTTCCATTTTATCCAGAGAGCCGAGCACGGTGCCATTATCTTCAACAGGTGTGAGCATGCCTGCAGTAGTAAACCAGGTGCGATCCCCTACAACTACAATGGCTTACCGACCCAGTACAGGCCCAGCATTTGCTGGGAAGGAAGCTCATCCTGTGAAGGATCTCAGCTATTATAAGAACCTTATTCGGCAACATGGTGCTGATGATAATAATAGTAGGCAAGAGACGCATGACTCCCAAATAGCTATCCGTCAAACTAATTTCAAAGATTTGAAACCGGTTCATAACAATAAACCAGGAGAAGGGAATTACAAAACCCAGAAACCTTGCATATACTTCAAAAGTTCAAGGGGTTGTCGAAATGGTTCCAATTGTCCTTATCAACATGACGTGTCAGCTCAATGGGGTTCTGTTGACATTCTAGGCTCCAAAAATGCAAAAAGAGCTAAATTAGGACCAGAAATCCGGGGCAGAGTATTAATTTAG 1677 0.4436 MKRARKSKRVSWAPGFNLCQVKLFLSEDCPSKVSQTSQDLLQAKTSSILHSSTNESHDLPPGFEDNHISNHLRNELSHLYQIKWKTPPLFALCQNWLVAAGEESREKVDQKLREMKVLEAVYPRPSAIPPSPSVSLDVEEEDYDDNLTPLIPIVPIEEEELMDVKPELPATIDTSATLQTQSLHHSISATDRPICSQLSTSSTLASPGTSGVEADVAAASAVVAAIMNSNEQGSSIDMDLLVKILNDPLLIEKLRSVHDGAAATTASASANLVGLPISGVKCTSPSVSSFPLTPDKPTSGVSPSNIVGLFPDSGLMPVTPSVQLMHTVDKPGTATLPFSRPVPGKLGTPSAPLPSHTIAADIHKPVNKTTDHWSSGGLPSVSTQRSQQDTVKQAAPMASILSREPSTVPLSSTGVSMPAVVNQVRSPTTTMAYRPSTGPAFAGKEAHPVKDLSYYKNLIRQHGADDNNSRQETHDSQIAIRQTNFKDLKPVHNNKPGEGNYKTQKPCIYFKSSRGCRNGSNCPYQHDVSAQWGSVDILGSKNAKRAKLGPEIRGRVLI 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5331g00099 558 ProSiteProfiles Zinc finger C3H1-type profile. 501 529 IPR000571 GO:0046872
Pral5331g00099 558 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 2 549 - -
Pral5331g00099 558 MobiDBLite consensus disorder prediction 369 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5331g00099 Pral-Chr5331 500693 506299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5331g00099 81 163 Homeobox Transcription Factor Family AT4G02560 40.964 6.66e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral5331g00099 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5331g00099 - - gmx:102661587 525.783