Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5331g00082 ATGGGCACCTGCTTCTCTTCCACGAAAGTGAGTGGCTCCAACAGCAATACCACAGCGAACGGCGCCACCGCCACCCACCACAATCGCAAAGAGACCCCCAAGCCTCAATCCCGCACGACCACGGTTAAATCTCAAGCGACGAACGAGCAGCGGCCAAAAGTACCGCATGAGATCCGTAACGCTCTGCCGAACAAGAATTCCCAGCAGCCCAAGCCCAAAGATAAGCAAAATCCGAAACGCCAGCCGTGCGGGAAACGGACCGATTTCGGCTATGACAAAGATTTCGATGCGCGTTACTCGCTCGGAAAATTGCTGGGACATGGTCAATTTGGCTACACATATGTTGGAGTAGACCTAGCAAAGGGCGATCGGGTGGCGGTGAAAAAAATTGACAAGAGCAAGATGATTCTCCCAATTGCCGTTGAGGATGTTAAGCGAGAGGTCAAGATTTTGAAAGAACTCACAGGCCATGAGAATGTGGTTCAGTTCTATAATGCTTTTGAGGACGATTCATATGTATACATAGTTATGGAGTTATGCGAGGGCGGAGAACTATTAGATCGTATATTGGCCAAGAAAGACAGCCGTTATTCAGAGAAGGATGCGGCAGTGGTCGTAAGGCAGATGCTCAAAGTTGCAGCCGAGTGTCATTTACATGGTTTGGTCCACCGGGACATGAAACCAGAGAATTTTCTTTTCAAATCACCTAGAGCAGATTCACCTTTGAAGGCTACAGATTTTGGTTTGTCAGATTTCATTAAACCCGGAAAGAAGTTTCATGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAAGTGTTGAAGCGTAAGTCAGGACCAGAATCAGATGTATGGAGTATTGGTGTAATTACATACATATTGCTTTGTGGGAGGCGCCCGTTTTGGGATAAGACGGAGGATGGTATCTTTAAGGAGGTATTACGTAACAAGCCTGATTTCCGGCGGAAACCATGGCCATCTATAAGTAACGCTGCGAAAGATTTTGTGAAGAAATTGCTCGTAAAGGATCCTCGGGCTAGATTAACTGCTGCTCAGGCTCTATCTCATCCATGGGTTAGGGAAGGAGGAGAGGCTTCAGAGATTCCTATTGATATATCTGTCCTTAGCAACATGCGGCAATTTGTGAAATTTAGTCGGTTGAAACAATTTGCACTTAGGGCACTAGCTAGCACACTTAATGAAGAAGAGTTGGCTGATCTCAGAGATCAATTTGATGCAATTGATGTGGACAAAAGTGGTGCTATTAGTCTAGAAGAGATGAGACATGCTCTTGCTAAGGATATCCCTTGGAGGTTGAAAGATTCCCGTGTTCTTGAGATATTACAAGCGATAGATAGCAACACAGATGGGCTTGTCGATTTCTCCGAGTTTGTGGCTGCTACATTACACGTACATCAATTGGAGGAGCATGACTCAGACAAGTGGCTTCACCGGTCACAAGCTGCTTTTGAGAAATTTGATATAGACAAGGATGGCTATATTACTCCAGAAGAACTTAGATTGCATACGGGCTTACGAGGATCCATTGATTCGCTACTTGAGGAAGCTGATATTGACAAGGATGGAAAAATCAGCCTCCCAGAGTTTCGAAGACTCCTTAGAACTGCAAGCATTAGTTCACAAACTGTGACAACCCCACGGAAGATGTTAGATTAG 1677 0.4538 MGTCFSSTKVSGSNSNTTANGATATHHNRKETPKPQSRTTTVKSQATNEQRPKVPHEIRNALPNKNSQQPKPKDKQNPKRQPCGKRTDFGYDKDFDARYSLGKLLGHGQFGYTYVGVDLAKGDRVAVKKIDKSKMILPIAVEDVKREVKILKELTGHENVVQFYNAFEDDSYVYIVMELCEGGELLDRILAKKDSRYSEKDAAVVVRQMLKVAAECHLHGLVHRDMKPENFLFKSPRADSPLKATDFGLSDFIKPGKKFHDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPSISNAAKDFVKKLLVKDPRARLTAAQALSHPWVREGGEASEIPIDISVLSNMRQFVKFSRLKQFALRALASTLNEEELADLRDQFDAIDVDKSGAISLEEMRHALAKDIPWRLKDSRVLEILQAIDSNTDGLVDFSEFVAATLHVHQLEEHDSDKWLHRSQAAFEKFDIDKDGYITPEELRLHTGLRGSIDSLLEEADIDKDGKISLPEFRRLLRTASISSQTVTTPRKMLD 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5331g00082 558 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672|GO:0006468
Pral5331g00082 558 ProSiteProfiles EF-hand calcium-binding domain profile. 402 437 IPR002048 GO:0005509
Pral5331g00082 558 Gene3D - 381 539 - -
Pral5331g00082 558 ProSiteProfiles EF-hand calcium-binding domain profile. 481 516 IPR002048 GO:0005509
Pral5331g00082 558 ProSitePatterns EF-hand calcium-binding domain. 524 536 IPR018247 -
Pral5331g00082 558 Gene3D - 400 469 - -
Pral5331g00082 558 Pfam EF-hand domain pair 406 468 IPR002048 GO:0005509
Pral5331g00082 558 Pfam EF-hand domain pair 488 540 IPR002048 GO:0005509
Pral5331g00082 558 Gene3D Phosphorylase Kinase; domain 1 92 184 - -
Pral5331g00082 558 SMART efh_1 515 543 IPR002048 GO:0005509
Pral5331g00082 558 SMART efh_1 406 434 IPR002048 GO:0005509
Pral5331g00082 558 SMART efh_1 485 513 IPR002048 GO:0005509
Pral5331g00082 558 SMART efh_1 443 471 IPR002048 GO:0005509
Pral5331g00082 558 MobiDBLite consensus disorder prediction 1 26 - -
Pral5331g00082 558 MobiDBLite consensus disorder prediction 72 89 - -
Pral5331g00082 558 ProSitePatterns EF-hand calcium-binding domain. 415 427 IPR018247 -
Pral5331g00082 558 CDD STKc_CAMK 98 358 - -
Pral5331g00082 558 MobiDBLite consensus disorder prediction 1 89 - -
Pral5331g00082 558 FunFam Calcium-dependent protein kinase 28 400 469 - -
Pral5331g00082 558 SMART serkin_6 99 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5331g00082 558 ProSiteProfiles Protein kinase domain profile. 99 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5331g00082 558 ProSitePatterns Protein kinases ATP-binding region signature. 105 129 IPR017441 GO:0005524
Pral5331g00082 558 Pfam Protein kinase domain 99 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5331g00082 558 ProSiteProfiles EF-hand calcium-binding domain profile. 517 546 IPR002048 GO:0005509
Pral5331g00082 558 ProSitePatterns EF-hand calcium-binding domain. 452 464 IPR018247 -
Pral5331g00082 558 Gene3D Transferase(Phosphotransferase) domain 1 185 380 - -
Pral5331g00082 558 FunFam calcium-dependent protein kinase 28-like 185 378 - -
Pral5331g00082 558 PANTHER SERINE/THREONINE-PROTEIN KINASE 77 528 - -
Pral5331g00082 558 SUPERFAMILY Protein kinase-like (PK-like) 98 372 IPR011009 -
Pral5331g00082 558 ProSitePatterns EF-hand calcium-binding domain. 494 506 IPR018247 -
Pral5331g00082 558 FunFam CDPK-related kinase 1 92 184 - -
Pral5331g00082 558 SUPERFAMILY EF-hand 388 542 IPR011992 -
Pral5331g00082 558 ProSiteProfiles EF-hand calcium-binding domain profile. 439 474 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5331g00082 Pral-Chr5331 414963 419758 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5331g00082 1 553 EF-hand Containing Proteins AT2G17890 75.304 0.0 856
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pral5331g00082 Pkinase 1e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5331g00082 K13412 - gmx:100817249 902.508