Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5331g00076 ATGGCGGAGGAGAGATCAACTGGTGTGGTTCAGTGGTTCAGCGATTCCAAAGGCTTTGGCTTTATCAAGCCGGACGATGGAGGGGAAGATCTCTTCGTTCATCAATCTTCCATCAGATCCGAAGGATATCGTAGTCTTGTAGAAGGCGATCGTGTCGAGTTCGTGATTGCCTCTGGCGACAACGACAAAACCAAAGCTATCGATGTTACTGGCCCCGATGGAGCTCCTCTACAGTCCAAGAAAGACAATTACGGTGGTCGCGATGGGGGCTATGGCTTTAGCGGTGGATGGAGAGGCGGGGATAGGCGTAACAGTGGGGGAGCTAGCGGTGCTGGTTGCTATCAGTGCGGCGATGTTGGCCACTTAGCCAGAGATTGCAACCGCGGCAATAATGCCGGTGGCCCATCTTGTTTTAAATGTGGCGAAGTTGGGCACTTGGCTAGGGACTGTTCACTTGGAAATAATGGCGGCGGCGGCGGGGCTTGCTTTAGGTGTCATGAGTATGGGCATATGGCGCGGGACTGCACCAGGGGAAGCGGTGGGAGCGGTGGAGGTTGCTTCACATGTGGTGAAGTGGGTCACTTGGCCAGGGATTGCACCAAGGACAGCGGAAGGTATGGAGGCGGCGGCGGCGGCGGCGGCACCCGAGGAAATACATGCTTTAATTGTGGGAGGCGTGGGCATTTTGCGCGAGACTGCCCTGAAGCCTCTGCATGA 717 0.5593 MAEERSTGVVQWFSDSKGFGFIKPDDGGEDLFVHQSSIRSEGYRSLVEGDRVEFVIASGDNDKTKAIDVTGPDGAPLQSKKDNYGGRDGGYGFSGGWRGGDRRNSGGASGAGCYQCGDVGHLARDCNRGNNAGGPSCFKCGEVGHLARDCSLGNNGGGGGACFRCHEYGHMARDCTRGSGGSGGGCFTCGEVGHLARDCTKDSGRYGGGGGGGGTRGNTCFNCGRRGHFARDCPEASA 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5331g00076 238 ProSiteProfiles Zinc finger CCHC-type profile. 113 126 IPR001878 GO:0003676|GO:0008270
Pral5331g00076 238 Gene3D - 98 130 - -
Pral5331g00076 238 SMART c2hcfinal6 161 177 IPR001878 GO:0003676|GO:0008270
Pral5331g00076 238 SMART c2hcfinal6 136 152 IPR001878 GO:0003676|GO:0008270
Pral5331g00076 238 SMART c2hcfinal6 112 128 IPR001878 GO:0003676|GO:0008270
Pral5331g00076 238 SMART c2hcfinal6 185 201 IPR001878 GO:0003676|GO:0008270
Pral5331g00076 238 SMART c2hcfinal6 219 235 IPR001878 GO:0003676|GO:0008270
Pral5331g00076 238 Pfam Zinc knuckle 161 176 IPR001878 GO:0003676|GO:0008270
Pral5331g00076 238 Pfam Zinc knuckle 136 151 IPR001878 GO:0003676|GO:0008270
Pral5331g00076 238 Pfam Zinc knuckle 112 126 IPR001878 GO:0003676|GO:0008270
Pral5331g00076 238 Pfam Zinc knuckle 185 201 IPR001878 GO:0003676|GO:0008270
Pral5331g00076 238 Pfam Zinc knuckle 218 235 IPR001878 GO:0003676|GO:0008270
Pral5331g00076 238 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Pral5331g00076 238 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Pral5331g00076 238 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Pral5331g00076 238 ProSiteProfiles Zinc finger CCHC-type profile. 137 150 IPR001878 GO:0003676|GO:0008270
Pral5331g00076 238 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Pral5331g00076 238 SUPERFAMILY Nucleic acid-binding proteins 3 71 IPR012340 -
Pral5331g00076 238 SMART csp_8 7 72 IPR011129 GO:0003676
Pral5331g00076 238 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Pral5331g00076 238 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Pral5331g00076 238 ProSiteProfiles Zinc finger CCHC-type profile. 220 235 IPR001878 GO:0003676|GO:0008270
Pral5331g00076 238 Gene3D - 156 181 - -
Pral5331g00076 238 Gene3D - 131 155 - -
Pral5331g00076 238 Gene3D - 182 207 - -
Pral5331g00076 238 Gene3D - 213 238 - -
Pral5331g00076 238 Gene3D - 1 83 IPR012340 -
Pral5331g00076 238 ProSiteProfiles Zinc finger CCHC-type profile. 186 201 IPR001878 GO:0003676|GO:0008270
Pral5331g00076 238 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Pral5331g00076 238 SUPERFAMILY Retrovirus zinc finger-like domains 155 202 IPR036875 GO:0003676|GO:0008270
Pral5331g00076 238 SUPERFAMILY Retrovirus zinc finger-like domains 105 152 IPR036875 GO:0003676|GO:0008270
Pral5331g00076 238 SUPERFAMILY Retrovirus zinc finger-like domains 202 235 IPR036875 GO:0003676|GO:0008270
Pral5331g00076 238 ProSiteProfiles Zinc finger CCHC-type profile. 162 177 IPR001878 GO:0003676|GO:0008270
Pral5331g00076 238 PANTHER COLD SHOCK DOMAIN PROTEIN 2 179 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5331g00076 Pral-Chr5331 382668 383778 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Pral5331g00076 CSD 1.5e-24 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5331g00076 K09250 - qsa:O6P43_033606 315.079