Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral5331g00027 | ATGGATTTTGTGGCGAATCCTTTTCCTTTGCCTTCTTCCGCGTTGGGCTCCTTCGGGAGCGTCGTTGAGAGGGTTAGACGCATAAGCAGTCTCGCGGTTTCTGTTATAATTGGAAACATCCTCTCTGCGATCTTGACATTTTGCTTTGCCTTAGTGGGAACGTTATTGGGTGCCATGACAGGAGCTTTGATAGGCCAAGAGACCGAGAGTGGCTTCATTAGAGGAGCAGCAGTTGGTGCCATTTCCGGAGCTGTTTTCTCCATTGAAGTATTTGAATCTTCTCTTGTTCTTTGGCAATCTGATGAATCTGGGATTGGGTGCCTCTTATATCTGATTGATGTCATTGCTAGCCTATTGAGTGGGAGACTTGTGCGTGAGAGAATTGGCCCTGCCATGTTAAGTGCTGTCCAAAGTCAGATGGGTGCTGTTGAAGCAAACTTTGAGGAGGTTCAAAACATCTTTGACACTGGTGGTTGCAAGGGCTTAACTGGGGATTGTGTTGAGAAGATCCCGAAGATCACAATCACAAATGATAATATTATTGATGCTTCGGGTGAAAGAGTTTCTTGTTCAGTCTGCCTCCAGGACTTTCAGCCTGGAGAGACGGTTAGAAGTTTGCCTCATTGCCATCACATGTTCCACCTACCATGCATCGATAAGTGGCTCTTCAGGCACGGTTCATGTCCGTTATGCAGAAGGGATCTGTAA | 708 | 0.4647 | MDFVANPFPLPSSALGSFGSVVERVRRISSLAVSVIIGNILSAILTFCFALVGTLLGAMTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVEANFEEVQNIFDTGGCKGLTGDCVEKIPKITITNDNIIDASGERVSCSVCLQDFQPGETVRSLPHCHHMFHLPCIDKWLFRHGSCPLCRRDL | 235 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral5331g00027 | 235 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 155 | 235 | IPR013083 | - | |
| Pral5331g00027 | 235 | FunFam | NEP1-interacting protein-like 1 | 150 | 235 | - | - | |
| Pral5331g00027 | 235 | SMART | ring_2 | 190 | 231 | IPR001841 | - | |
| Pral5331g00027 | 235 | PANTHER | NEP1-INTERACTING PROTEIN-LIKE 2 | 21 | 234 | IPR044523 | - | |
| Pral5331g00027 | 235 | Pfam | Ring finger domain | 189 | 232 | IPR001841 | - | |
| Pral5331g00027 | 235 | ProSiteProfiles | Zinc finger RING-type profile. | 190 | 232 | IPR001841 | - | |
| Pral5331g00027 | 235 | CDD | RING-H2_NIPL1-like | 189 | 232 | - | - | |
| Pral5331g00027 | 235 | SUPERFAMILY | RING/U-box | 179 | 235 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral5331g00027 | Pral-Chr5331 | 160964 | 162941 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral5331g00027 | 20 | 235 | C3H Transcription Factor Family | AT5G66070 | 77.778 | 6.61e-119 | 336 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral5331g00027 | - | - | lja:Lj2g3v1670720.1 | 404.831 |