Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5331g00017 ATGGCGGATTCTCCTCTCAGAAGGACTTCAAGGTCTCCGTCCCCATGGAGAGCCCAGTCAAGATCGAGATCGAGGTCAAAGACTCCGCCTAGGGCTAGGTCCAGGTCTCGTTCGAGGTCAAGATCCTGGTCAAGACACAGGCCAAGGTCCCGTTCAAGGAGCCGGGGCAGATCAAGTTCTAGAAGTCATGGAAGGACTGACGTTACAAATCCTGGGAATACTCTCTATGTTACTGGGCTATCTTCAAGGGTTACTGAGAGGGACCTAGAAGAGCACTTTTCTAAGGAAGGAAAGGTTGCTTCATGTTTCCTGGTGGTGGAGCCTCGGACCCGTATTTCCCGTGGTTTTGCTTTTGTTACAATGGATACTGTTGAGGATGCAAACCGCTGTATCAAGTATCTTAATCAATCTGTACTTGAAGGTCGCTATATTACAGTTGAGCAGTCACGGAGGAAAAGGGCTAGAACTCCTACGCCTGGGCACTATCTTGGTCTAAAAAGCACTAGAGACTATGGTTATCGTGGTGATCGTGGAAGGTACCGTGGTGGTTCAGGTCGTGATGACTATAGTTTTCGTAGATCTCCAAGGCGCTCACCATACCGAGGTGGTCGGGATTCATCACTGCGGCACTCACCCTATGGTGGAAGGTCTCGGAGGGATAGATCAAGGTCCCTCCCTTATTCTCCTTATGGCAGTCCAGACAGGAAGTACGCTCGGGGGTCTAGGTGA 729 0.5048 MADSPLRRTSRSPSPWRAQSRSRSRSKTPPRARSRSRSRSRSWSRHRPRSRSRSRGRSSSRSHGRTDVTNPGNTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDTVEDANRCIKYLNQSVLEGRYITVEQSRRKRARTPTPGHYLGLKSTRDYGYRGDRGRYRGGSGRDDYSFRRSPRRSPYRGGRDSSLRHSPYGGRSRRDRSRSLPYSPYGSPDRKYARGSR 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5331g00017 242 MobiDBLite consensus disorder prediction 148 242 - -
Pral5331g00017 242 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 3 157 - -
Pral5331g00017 242 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 151 IPR000504 GO:0003723
Pral5331g00017 242 MobiDBLite consensus disorder prediction 1 79 - -
Pral5331g00017 242 Gene3D - 12 157 IPR012677 -
Pral5331g00017 242 MobiDBLite consensus disorder prediction 24 59 - -
Pral5331g00017 242 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 144 IPR000504 GO:0003723
Pral5331g00017 242 MobiDBLite consensus disorder prediction 170 204 - -
Pral5331g00017 242 MobiDBLite consensus disorder prediction 63 79 - -
Pral5331g00017 242 SUPERFAMILY RNA-binding domain, RBD 69 183 IPR035979 GO:0003676
Pral5331g00017 242 SMART rrm1_1 74 147 IPR000504 GO:0003723
Pral5331g00017 242 MobiDBLite consensus disorder prediction 1 23 - -
Pral5331g00017 242 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 71 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5331g00017 Pral-Chr5331 105121 108362 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5331g00017 72 158 Eukaryotic Initiation Factors Gene Family AT1G49760 32.184 1.29e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5331g00017 K12897 - gmx:100527350 278.87