Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5330g00020 ATGGGAACTCCCGAATTCCCAGATCTTGGAAGGCATTGCGCTGTTGGTGATTGCAAGTTGATTGATTTCTTGCCTTTCACATGCGATCGTTGCAATCAGGTATATTGTTTGGAGCACAGAGGTTATATTAAACATCAGTGTCAGAAAGCGGACAGACTGGATGTCACTGTTGTCATATGCCCGCTTTGTGCAAAAGGAGTCCGCTTAGTTCCTGAACAAGATCCAAACATAACTTGGGAGAATCACGTCAACACTGAGTGTGACCCATCAAATTATGAGAGAGCCATGAAGAAGAAAAAATGCCCTGCCCCGGGATGCAGAGAGGTCTTGGTGTTCTCAAACACGATCAAATGCAGGGATTGCTTGGTGGATCATTGTCTAAAGCATCGTTTTGGCCCTGATCACAAGTGTCCTGGACCCAAAAGTTTGGGAACAAGCTTTTCATTTATGAACCTCTTGAGCAGAAGTAAAAAAGAAGAGTCAAAGCCAAATCCATCTCCACCTACATCCACATCAAAATGGGCTTCAGGTTTTCGCAACGTGGCATCAAATATTCGAGCTTCAGCTGAAGCCAGCATGTCAAAATTGGGTAATGAAATTAACCAAGCTTGGCAAACAGCAAAGGATGGGGTGGGACAGAGCAGTGGGAGAGGTTATGAAAATGGGCAAGCGGAGGTGGAGCAATGTCCTCAGTGCAATGCAAAGTTTTCCTCTGTCACTTCTTTGGTGGATCATGTGCAGAAAGTTCATGAAAGAAGCAGCAACCGATCCAGAGGGGTGGCAAAGGCGACCGTGGATGCCTGTCCCAAGTGTAGTAGAGGATTTCTAGATCCAGTGGCTCTTGTGGAGCATGTTGAGAGGGATCACGGTGGTAATTCAAGAGCCTAG 888 0.4617 MGTPEFPDLGRHCAVGDCKLIDFLPFTCDRCNQVYCLEHRGYIKHQCQKADRLDVTVVICPLCAKGVRLVPEQDPNITWENHVNTECDPSNYERAMKKKKCPAPGCREVLVFSNTIKCRDCLVDHCLKHRFGPDHKCPGPKSLGTSFSFMNLLSRSKKEESKPNPSPPTSTSKWASGFRNVASNIRASAEASMSKLGNEINQAWQTAKDGVGQSSGRGYENGQAEVEQCPQCNAKFSSVTSLVDHVQKVHERSSNRSRGVAKATVDACPKCSRGFLDPVALVEHVERDHGGNSRA 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5330g00020 295 MobiDBLite consensus disorder prediction 155 177 - -
Pral5330g00020 295 Pfam AN1-like Zinc finger 101 140 IPR000058 GO:0008270
Pral5330g00020 295 Pfam AN1-like Zinc finger 13 51 IPR000058 GO:0008270
Pral5330g00020 295 Gene3D - 2 56 IPR035896 -
Pral5330g00020 295 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 257 - -
Pral5330g00020 295 ProSitePatterns Zinc finger C2H2 type domain signature. 229 250 IPR013087 -
Pral5330g00020 295 Gene3D Classic Zinc Finger 191 293 - -
Pral5330g00020 295 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Pral5330g00020 295 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Pral5330g00020 295 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Pral5330g00020 295 Pfam C2H2-type zinc finger 228 250 - -
Pral5330g00020 295 SUPERFAMILY AN1-like Zinc finger 6 50 IPR035896 -
Pral5330g00020 295 SMART c2h2final6 266 289 IPR013087 -
Pral5330g00020 295 SMART c2h2final6 227 250 IPR013087 -
Pral5330g00020 295 SUPERFAMILY AN1-like Zinc finger 55 142 IPR035896 -
Pral5330g00020 295 ProSitePatterns Zinc finger C2H2 type domain signature. 268 289 IPR013087 -
Pral5330g00020 295 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Pral5330g00020 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 227 255 IPR013087 -
Pral5330g00020 295 Gene3D - 80 147 IPR035896 -
Pral5330g00020 295 MobiDBLite consensus disorder prediction 163 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5330g00020 Pral-Chr5330 93764 96555 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5330g00020 1 295 C2H2 Transcription Factor Family AT2G41835 61.538 8.04e-123 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral5330g00020 zf-AN1 2.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5330g00020 - - pcin:129293246 559.296